RnoINT0131865 @ rn6
Intron Retention
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84970385-84971009:+
Coord C1 exon
chr10:84970385-84970562
Coord A exon
chr10:84970563-84970745
Coord C2 exon
chr10:84970746-84971009
Length
183 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
ACCTCTGACTTTCCCAACAGGAG
3' ss Score
11.91
Exon sequences
Seq C1 exon
GTCGGTATTCAAACCTTTCATCTTTGAAGTGGGGGTGTCCCAGCCCCCCCAGGTGTTGTCCCCCACTTTTGGAGCCCAGGACCCTGTTCGGATCCTCCCCAGATTCCAGACTCAGGTGGACCGTCGACATTCACTGTATCGTGGACACCAGGCAGCCCTGGGGCTGATGGACGAGCAG
Seq A exon
GTAACCCCGGGGACTGTGCTGAGGGCAGAGAGGAAATAAATACCTTTCGGATATTCTGGAACCAGAAAGGCCTGGGCCTAGAGGCGGTGGTAGATCTGGGGGAGGTGGGACCTTCAGCTAGTCTTGGGTTTCTCTTGCCTGGGGGAGAGGGTCCACATTTCTCACCTCTGACTTTCCCAACAG
Seq C2 exon
GAGCAGGCACAACTGCGGCAAGAGCAGCAGAGTCTGGAGCAGGAGGGCCTGGAGGCTCTCAGAGGACTGCTTACTGGTGAACAGACCCCAGCCCCCCAGGAGCTGGGCAGCCTCTTCCAGGCCTTTGTGGAGAGGGAGCACCAGGTCTATGCTTAAGCATTCTGCAGCTCTGGGGCCAGCTGCCCTCTGTGGTGGGCGCGCTGGGGGTGAATCAGCCATCCCTTCCCCCTGCTCATCTAGGTTCTGAGTGGATTAATAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214:ENSRNOT00000013580:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCGGATCCTCCCCAGAT
R:
CATAGACCTGGTGCTCCCTCT
Band lengths:
246-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]