HsaINT0146145 @ hg38
Intron Retention
Gene
ENSG00000141295 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr17:47837700-47838450:-
Coord C1 exon
chr17:47838270-47838450
Coord A exon
chr17:47838003-47838269
Coord C2 exon
chr17:47837700-47838002
Length
267 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
TCAGCTTTCCCTTGGGGCAGGAT
3' ss Score
6.04
Exon sequences
Seq C1 exon
GTCTGTGTTCAAACCTTTCATCTTCGGGATGGGGGTGGCCCAGGCCCCCCAGGTGCTGTCCCCCACTTTTGGAGCACAAGACCCTGTTCGGACCCTGCCCCGATTCCAGACTCAGGTAGATCGTCGGCATACCCTCTACCGTGGACACCAGGCAGCCCTGGGGCTGATGGAGAGAGATCAG
Seq A exon
GTATCCCCCAGGGAGTAGGGGCTACCTTGAGGGGATGATAGACCTCCCCCACTCCCAGTGGGACTCTGGAAATATGAAGGAACTAGGGAGTGGAAGAGATTTCAGAGCTGGGGAGAGGAGTTCCTCCCTTCAAAGCCAGCAACTGCCTTTGGGGAATGTCGGGGGGTATCTCCTTTCTCCTGCTTGTGTGAGGTGGTACACAGTCCCCCCTTCACCTGGCGGGAAGCCTGTCCCGGACAGACTCATCTCAGCTTTCCCTTGGGGCAG
Seq C2 exon
GATCGGGGGCAGCAGCTCCAGCAGAAACAGCAGGATCTGGAGCAGGAAGGCCTCGAGGCCACACAGGGGCTGCTGGCCGGCGAGTGGGCCCCACCCCTCTGGGAGCTGGGCAGCCTCTTCCAGGCCTTCGTGAAGAGGGAGAGCCAGGCTTATGCGTAAGCTTCATAGCTTCTGCTGGCCTGGGGTGGACCCAGGACCCCTGGGGCCTGGGTGCCCTGAGTGGTGGTAAAGTGGAGCAATCCCTTCACGCTCCTTGGCCATGTTCTGAGCGGCCAGCTTGGCCTTTGCCTTAATAAATGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141295:ENST00000290216:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCAGGTAGATCGTCGGC
R:
CTTTACCACCACTCAGGGCAC
Band lengths:
305-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development