GgaINT1024895 @ galGal4
Intron Retention
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5912716-5913184:-
Coord C1 exon
chr19:5912990-5913184
Coord A exon
chr19:5912908-5912989
Coord C2 exon
chr19:5912716-5912907
Length
82 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
CCTGTCCCTACAACCCGCAGTCA
3' ss Score
7.44
Exon sequences
Seq C1 exon
AGGTGCCCCGCAACGACACGTGCCCTGAGCTGCCTGACATCGCCAACGGCTGGAAGACCGCCTCGCAGCCTGAGCTGCTGCACGGCACCGTCGTCACCTTCCACTGCTACCCCGGCTTCGAGCTGGCTGGTGCCGACCTGCTCATGTGCCACTGGGACCTGACGTGGAGCGGCGACCTGCCATCATGCGAGCGGG
Seq A exon
GTGAGCGGGGTGACCCATCCCACGTCCCCTCCTGCCACCCCATCCCACCGTCACCGTCACCGCCTGTCCCTACAACCCGCAG
Seq C2 exon
TCACCACCTGCCGGGACCCCGGGGACGCCGAGCACAGCCGCAGGGTGGTCTCCAGCCCCAAATTCCCAGTGGGGTCCACCGTGCGCTTCGTCTGCGATAAGGGCTACGTGCTGGCGGGCGCCGGGCTCCTCACCTGCCACGACCGCGCATCGGGGGGACCCAAGTGGAGCGACCGCCTGCCCAAATGCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431:ENSGALT00000046159:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTCACCTTCCACTGCTAC
R:
CTGGGAATTTGGGGCTGGAGA
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]