RnoINT0133908 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64868062-64869466:-
Coord C1 exon
chr10:64869272-64869466
Coord A exon
chr10:64868254-64869271
Coord C2 exon
chr10:64868062-64868253
Length
1018 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCCTGCTTTTCCATTCGTAGTGA
3' ss Score
8.26
Exon sequences
Seq C1 exon
AGGTGCCCCGCAATGACACATGTCCAGAGCTTCCCGAGATCCCCAACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTGCATGGCACGGTGGTCACCTATCAGTGCTACCCCGGTTACCAGGTGGTGGGATCCAGTATTCTCATGTGCCAGTGGGACCTGAGCTGGAGTGAGGACCTGCCCTCATGCCAGAGAG
Seq A exon
GTGAGTCTGCCTGTCCCTGTGGTCCCTCCCAGTCTGCCTCCTGGGTTCTGAGAGAAAAATCTAGCACTGGTCCTGTTTCTGCTAGCAACCTTGTTCTTCTAACTTGTCCCTCAGTTTCCTTATCTGTGAAATAGGATGATCCATTGTCACAGGACTTCTGGATAAGTACTACAAGCATCTCCTGGCTGGATGGTGACCAGGAATTAATGACTTTGTTGACCTTAACAAGTGGGGGAAAGGATACATCAGCCAGAGGGTAGACACAGTCAGGCATGGTGTGTCACACACCTGTCATTTTAGCATTCAGGAGCTGAGGCAAGAGGGTCAGGAGTTGGAAGATTGCCTGAGGTATAGTGTGAGATATTTATCTCCAAAAAAGGGGGCTGAATGGCCGAGAGCTCTTACTGCTCTTGCAGAAGAGGTTTGGTTCCCAGCACCCACATCAGGTAGCTCATAGTCTCCTTAGCCAATTCCAACACCCTCTTCTAGCCTTAATGAGTATATAAATGTATGCAGTGCATATGAAACACACACACACACACACACACACACACACACAATTTAAAAAGTGAAAGGCCTGAGGCCTGACGATGTAGCTCCATGGTAGAGCGCTACCTGTCCCAGTGCTGCAAAAAGAGAAGCCAGAGTAAACCCTACAGTCTGGTGTTAGCTGTCCTGTAACGCTCATAAAGCCAGGGTGAACGGATCTTTCTCCCCACCCCCTCGATCTCTTCCTCTCCCCCACCCCGCCCCTTGCTCTCACTCTGTCTCTGATAGTGTTTCTAGCCTGAAACTCCTATGAAGCTGAGGATTACCTTGAATTTCTGATCCTCCTGCCTCCACTTTCTTAGGAGGATTACATCCACCTTCTGGAGTGCTGGGATTACAGCACGCACCACCAGGCTGGGTTATGCAGTGCTGTCCATTAGACCCAGGGTTTCATGAACTCTTCGGAAGCATTCCTACTGACTGAACTGTGGCCCCAGACGCTGAGCCTGCCCTGCTTTTCCATTCGTAG
Seq C2 exon
TGACATCCTGCCATGACCCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCTCAAGTTTCCTGTGGGAGCAACTGTGCAGTATATCTGTGACCAGGGTTTTGTGCTCACGGGTAGCGCCATCCTTACTTGCCATGATCGTCAAGCGGGCAGTCCCAAGTGGAGTGACAGGGCCCCCAAGTGTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGAGCTTCCCGAGATC
R:
CCTGTCACTCCACTTGGGACT
Band lengths:
351-1369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]