GgaINT0006825 @ galGal3
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7352528-7352989:+
Coord C1 exon
chr15:7352528-7352722
Coord A exon
chr15:7352723-7352797
Coord C2 exon
chr15:7352798-7352989
Length
75 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
GCATCCCCTCTTCTCCCCAGTTA
3' ss Score
7.29
Exon sequences
Seq C1 exon
AGGTGTCCCGCAACGACTCCTGCTCCGACCTGCCCGAGATCCAGAACGGCTGGAAGACCACATCACACACCGAGCTGGTGAGAGGGGCCAAGATCACCTACCAGTGTGACCCAGGCTATGACATCGTGGGGAGCGACACGCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCTTTCTGTGAAAAGA
Seq A exon
GTGAGTGCCCCACTCTGCCCTGAGCAATGTGCTCCGTGCCCCCAGGACCCACCCCGCATCCCCTCTTCTCCCCAG
Seq C2 exon
TTATGTACTGCACAGACCCAGGAGAGGTGGAGCACTCGACTCGCCTCATCTCCGACCCCGTGCTGCTGGTGGGCACCACCATCCAGTACACCTGCAATCCTGGCTTCGTGCTGGAGGGCAGCTCACTGCTCACCTGCTACAGCCGTGAGACCGGGACTCCCATCTGGACCTCACGGCTCCCACACTGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGACCACATCACACACCG
R:
CTCTCCTGGGTCTGTGCAGTA
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]