HsaINT0148441 @ hg19
Intron Retention
Gene
ENSG00000100095 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:10763]
Coordinates
chr22:26743685-26747209:+
Coord C1 exon
chr22:26743685-26743879
Coord A exon
chr22:26743880-26747017
Coord C2 exon
chr22:26747018-26747209
Length
3138 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TCTGGTTTCATCCCGTGTAGTTA
3' ss Score
5.48
Exon sequences
Seq C1 exon
AGGTATCAAGGAATGACTCCTGCTCGGATTTACCCGAGATCCAGAATGGCTGGAAAACCACTTCTCACACGGAGTTGGTGCGGGGAGCCAGAATCACCTACCAGTGTGACCCCGGCTATGACATCGTGGGGAGTGACACCCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCATTTTGTGAGAAAA
Seq A exon
GTAAGAGTGGTCTTGTTTCCTTCCTCTAGGTCCCTGGGTGGCAAATCCCTTCTAGGGATCTTTTTTTGGTGGGTGCAGTGGAGCTGTTTAATGTAGAATCTGGACTCCCCCTCCACCACCAATTCACGAGCATTGCTCACAAATGTCATTTTATAGCTGTCAGTGGAATTACAGACTCAGGTGCCTTCAGAAACCTGGACCATAATGTAAACGAGTGAGATAAGCTGGGTGTGAGACATTAGGGAGTGGTGTGAACTCCAGTGAATGGGAGCGTATGTAGCCTGGTGAAAAAGAACATTTGGCTGGGTGTAGTGGCTCATGCCTGTAATCCTAGTGCTTTGGGAGGCTGAGGTGGGAGGATCACTTGAGCCCATGAGTTTGATAGCAGCCTGGGCAATACAGTGAGACCCTATCTCTAAAAAATAATAATAAGCATAAAAATTAGCTGGGTGTGGTGGGACACACCTGTAGTCCTAGCTACTCAGGAGGCTGAGACAGAAGGATTGCTGGAACGCAGGTGTTTGAGCTATGATTATGCCTCTGCCCTTTAGCCTGGGTGACAGAGCAAAACCCTGTTGAGAGGGGTGGCTGGGAGAGAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGCAAGGGAGGGAAGGGAGGGAAGGGAGGGAAGGGAAGAAGGGAGGAAGGGAGGGGGAGGGAAGGGGAGGGAAGGGGAGGGAAGGGGAGGGAAGGGGAGGGAAGGGGAGAGAAGAGAGGGAAGGGGGGAGGGAAGGGGAGAGAAGGGAGGGAGGGGAGGGTGAGGGAAGGGGAGTGAAGGGGAGGGAGGGGAGGGAAGGAATGAAAGAGGGGAGGGAGGGAAGGAAGGAAGGGAGGGAGGGAAGGAAAAAGAGAGAAGGGAGAGGAGAGGAGAGGAAGGGAGGGAAAAATCATTATTATTTAACCATTTTAAGGGATTGGAATGAACATGAACTAGTTCCCTATAGAAGTCTTCTTACCTGCCTCATTTTTTGCCAAGAAAAGGCCCAAAGTGGGCAAATAAATTTGAATTGGGCCCCTTCTATGTGGGACTGTTTGCATTTCCATGCTGGGTCTCTCACTTATCCTCCATCCAAGACAGTGGAGACCCACCAATCACCTCTGTTGTTCTCTCTTCTGATGAAATGAGGTCAGAAAAACCCCTTGGCACAATGGTCTCCCCATAGAAGTCACTGGATTTCATTAACCTTTCATTGGTTAATCTCCTGTCTTGACATTGAAAGACATATATAGCCATATCTTAAAATTACATTGGTAACGATGCTTACTTATAGTACCCAGGCAGTAGTAAAATGATAGAATAGAAAGTGAAAATCTTTGATGATGTTACTCTTTGGAAACAACGCTGCTGTTAAACATTTATTCTATATTGCTTCAATTGTGTGTGTGTGTACATGCACATCATACATACATTACATGTCACACATAGACATCTATATATGTGTCATCTGTCATATGTCAATCATAGCTCACTGCAACCTCAAGGTTTTGGGCTCAAGCAGTCCTCCCACCACAGCCCCCCAAAATGCTGGGGTTACAGATGTGAACAACCACACCCAGCTAATTTTTAAAAATTTTTTGTAGAGACAGGGGTCTTGCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAGCCTCCCAGAGAGCTGGGATTACAGGCATGAGCCACCGCACCCAGCAGATCCATTCTTACAAACTTCCTGCATCTGCTTTTTTTTCAGCTCAGAAATGTGGATATCTTTTCATATCATACATGTTGTCCAGTTTATTCTCTTTTAATTGGTTTATTGTTTTCCTTTTATCTATATTGATTTTTTAATGTGAAAAGTAATGAAAGTTTATTTTACTACATTCCAGCACTACAGAGAAAGCAGTGAAGGCTCCCCCTCACTTTGTTCTCTTTAGCAGTTGCTCAGAATTTCATGGGATGGCTATTCCATGATATTTAACTCTTTCCCTGTTAAACTATTTGCAATGTTTCCTTTTTAAAAAAATCGCAAATAATAATGCAATATGCAACCTTATACATAGGTCTTTGGACCCTGATGCAAATTATTTGGGCAAATTCATATATATGTGTGTGTGTGTGTATATATATATATACACATATATATATATATATATTTATATGTATTTTTTTGAGGCAAGGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCCATAATGGCTCACTGCAGCCTTGACCTGCCAGGCTTAAGCGATCCTCTCACCTCAGCCTCCTGAGTAGCTGGAAAAACAGGTGTACCCCACCATGCCCCATTAATTTTTGTATTTTTTGTAGGGACCGGATCTTGCTGTGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGCGATTCATCCACCTCTGTCTTCCCTTTCAAGTCCTAGGATTACAGGCATGAGCTACCGTGCCCCACCTCTTTGGGCAAATTCTTAAAAGAGGAATTAAATTCAAGGCTATTTTCTCCTGGCCTATTCTCCAGCCACCTATCAACAAAAGATACATTATCTTCCAAAAAGGAAAAGAACTGAGTTAGGAAACTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTTCAAGCTCCGCTTCCCGGGTTCACGCCATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGAGTACAGGCGCCCACCACCAGGCCAGGCTAATTTTTTGTGTTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAATTGCTGGGACTACAGGCGTGAGCCACCGCACCCGGCCAAGTTAGGAAACTTTCTAGATCATTCTGTAATTCTCAGCAAACCCATGGTCATCCAGAGGTCTGACGTCCTCTTGGTCTGGTTTCATCCCGTGTAG
Seq C2 exon
TTATGTACTGCACCGACCCCGGAGAGGTGGATCACTCGACCCGCTTAATTTCGGATCCTGTGCTGCTGGTGGGGACCACCATCCAATACACCTGCAACCCCGGTTTTGTGCTTGAAGGGAGTTCTCTTCTGACCTGCTACAGCCGTGAAACAGGGACTCCCATCTGGACGTCTCGCCTGCCCCACTGCGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100095-SEZ6L:NM_001184773:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)