BtaINT0131725 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68294435-68295138:+
Coord C1 exon
chr17:68294435-68294629
Coord A exon
chr17:68294630-68294946
Coord C2 exon
chr17:68294947-68295138
Length
317 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
GTCTGATCTGTCTCGCACAGTCA
3' ss Score
6.46
Exon sequences
Seq C1 exon
AGGTGTCGAGGAACGACTCCTGCTCTGATTTGCCCGAGATCCAGAACGGCTGGAAAACCACTTCCCACACGGAGCTCGTGAGGGGGGCCCGAATCACCTACCAGTGTGACCCCGGCTACGACATCGTGGGGAGCGACACCCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCATTCTGCGAGAAAA
Seq A exon
GTAAGAGCTGTCTTGGCTTTTTTTCCCTTTAGGTCATCAGACGGTAAATCCCTCCATTACAAATACCATTAGGTGCAGTGTGCAACCTTGCATACGGGTCCTCGGACCCTGGCACAAACATTTCTCGGGAGCGCCAATTCTTATAAGCGAAATTAAAATCAAGTCTCTTTTGTCCTGGCCTATTCTCCAGCCACATGCATTGTCTTTCAAATGAGGAAAAAAACTAAGTGGGGAAGTGTTCCAGATCGTTCTGTAGTTCTCAGCAAACCGATGGTCGTGTGGCCCTAACGCCGCCTGGTCTGATCTGTCTCGCACAG
Seq C2 exon
TCATGTACTGCACCGACCCCGGGGAAGTGGACCACTCGACCCGCTTGATTTCTGACCCTGTGCTGCTGGTGGGCACCACCATCCAGTACACCTGCAACCCAGGCTTCGTGCTGGAGGGGAGCTCGCTCCTGACCTGCTACAGCCGCGAGACCGGCACCCCCATCTGGACCTCTCGCCTGCCCCACTGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569:ENSBTAT00000008629:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCTGCTCTGATTTGCCC
R:
GAGAGGTCCAGATGGGGGTG
Band lengths:
355-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development