DreINT0133578 @ danRer10
Intron Retention
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24590516-24595294:+
Coord C1 exon
chr15:24590516-24590710
Coord A exon
chr15:24590711-24595102
Coord C2 exon
chr15:24595103-24595294
Length
4392 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
3' ss Seq
TGTTGTTATTTGTGTACTAGTGC
3' ss Score
6.29
Exon sequences
Seq C1 exon
AGGTTCCTCGTAACGACACATGTCCAGAGCTTCCAGAGATCTCAAATGGCTGGAAGACCACATCCCACCCTGACCTTGTGCATGGCACAGTCGTCACCTATCAGTGTTATCCTGGCTTCGAGGTGGTGGGCACCGAAATGTTGATGTGCCAATGGGATCTGACCTGGAGCGGAGACCTGCCCAGCTGTGAAAGAG
Seq A exon
GTGAAAACGTGCACGCACACACACATTCACACACACATTCACAATGATAACCACTCTCTCTAAAATCCATTTTCACCCCACTTCCAAACCAGCCCGCACTGCCTATTGATCAAGAGCAATGCTGTGCTCCACAACTAGATGAGCTTTTGAATTCCATTTGAGGGGGGAATTTCGCAAGTGCCTTTTCGCCTCGATCCCATTCAAGGACAGGCGAGGAGTGAAGGATGGCTTTGTGGGTAATCACTCACTTTTCTTTCGAGGGCGACTTCAGGGAGGAAGCAGGCGCTGTTTTCTCTTCACAGTCTCTGTGCGTCTTCTGTCCAACAACTCTTTTACAAATATGATTTCTGTCATTATGGAAGAGAGATTTTGTAACATTTTGAGATTGTTTCATCAACAAATTTCAAACCAGCTCAGCTCCGCAGCTTACTTTCATAGACACTCCAGTCAAGTGTGGTAAAGTTTATTTTAATAATACAATTCATACACTCAGATAATTCAAAGTGGTTTGAATAAAAAGGTGGATCAATAAAGTAATCAACTATAATAAGAAGAAACAAGAAAGAATAAAAATGCTTTAAAGAAGATTAAAATTGTATTAAAACAGGTTTGAAAAGAACAAAAAGGAAACTGTACATAAATAGTGTGATCTGTTCAATGTAGCAGTGTTCAGTCACTAAACTAATATGTTTTAAAGAGCACATTTTATCTCTATTACAAGATGTGAGATAAGACTTTGGTGTCTCCAGAATGTGTCTGTAAAGTTTCAGCACCAAAAAACCCATCAGATTATTTATTATATAATGTAGAATTTGCCCATTTGGGGTAGCTGGTTTTGTAGCCTGTTAAACTGTTGGGTTTATATCACTACAATATGACTATACATACAGTTTTGTCCAAACAGCTTACAAAAGTTGATTTTCATCATAGGACCCTTTAAGCCTTAGTTTGAATGTACACATACAGTATGCTATTAGAGCACATCTGATCATTTCTGGAAGCTGATTGATTTTACTACAAAAATGTATTTTTTTCTTATAAAACATTGTTATTTTAAGAATACTTGTAAATTATTAGTAGTTTTGTGTAGCTAGACCTCAGACTAACAGCTGAGGAACTGGAAACTTTGGCCACATTTAATGGTCAACACAGGTTAACCAACCAATCATTTCGTTTTGTGCCACATCATGTTTAGGGGTGTGTAAATGTCCACAGAATAACACATTCATTCATAAACATCAACATAGGCACATATTCCAAATTATATGGAGTTAACTTGTTAACAAAGTTTTGACAGTGGAACCACGCCTTACTCTGTCTCCTTAACCAATCATCTACTCCTTGAAATGTTTTTAACGACGCCCTATCAGTCTACCTACCTGTTCACTGTTTATCCTCTTACTTCCCTTCCCCTTCATCCCACTGTTCCCTTACTATCCCTACATCCCTACATCCCTACAATAAAGCGTAGGTCAGAGTGTGGCGTAGTCCATGCTGGTGAACTGTCAGCAAAACACAAAGGAGTTTTTCTCGTTTTGAATTTCAGTTCTTATTTTAATGATGCATTTCTACATACTGACCTGAGATGACAGAAAGTGCAACCCATTAGTTTTCTTTGTGACAAAGTAGAAACCCTTAGACATCTTTTAACAATTTTATGACGTGAATCTTGCATAGTTTTAAGAATACTGCAAATTAATATATCTCGCATTATCTCACAGTTGGCATTTCTGTGTGGAGGTTGCAAGTACTCCCCATGTTCACGTGGGTTTCTTTCGGGTGCTCCGGTTTCCCCCACAATCCAAAGACATGCGATATAGGTGAATTGGGTGGACAAAATTGTCCATAGTGTATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGGGAGTGTTTCCCAGTACTAGCTGGAAGGGCATTCGCTGCATAAAACAAATGCCGGAATAGTTGGCAGTTCATTCTGCTGTGGCGACCCATAATAAATAAAGGACTAAGCCGAAGGAATGGAATGAATGTTTCCAGGTGAACTAGTTCAAATTCTTGCACATTTGACTCCCAGAAATGCTGTATATTTAAACCAATCAAAGGACAACTTTGAATCTCCTACATATAGTATTTCCAGAGAAGTGTCATTTGCATAAGTGTGTGGGAGGTGATTGGCGTGAGGATGAGACTAAAATATTAGTTACCAATGGATTTTATGGAGCGCAGAATAAATAAATGGATGAAGCAGGCGCCATTTTTGCTTCACAGTCTCTGTGCATCTTCCTCTCCTTTGACACCTTTGCTAACCCAATTTCTGCCATTTTGGATGATTTTTTATTTCTCTACACGCCTCCTGGTGAGATTTGGTTAGTGTCCCGTTGGCACACCAAGTGTTTTATAGAAGATTTTCAAATCAAGTCAGCTCTGCAATATACTTTTGTAGTAAAAGTCACTCCAGCGCTTGAAATGAAATCTGGCCGCCTGCCTTTTGTGTTGCCCAGACTTGCTCTGTGTGAATGTGTAATACTGCAGATATTCGTCACAGACATGACCCCAGGGTCCAGGTTCTGCCGCTGTCCCTCACAAAAACAGCAGGCCCAAAGCAGCAGGGACCGTTATCCGGTTCAAAGCTTCCCTCCCGCCACGCAAACATCATTAACTCAGTCGCCTCTGCCGTCGCCTCTTCCTGCCCTTCCACTGCTGAGGAGCGAATTGGGTTTGCAGCTGGGCAGGCTGAAGCAAACTAATCTTTTTATTATACTGCACCGTGTGTCCGTACACTGCCCTGAGATCAAAGTCGCATGTCCTGCTTTCCTCACACTGTCTGGATGAGATGAGCTGCGGCTCCTGGCACTCTGATTATATGGATCTGCGTGTATGACGTGTGATGTGAAAGAGAAACCAGAAAATATACTACTATAAAAAACATACCTCAAATACATTGATATTTGGAAAGAGGTGTCTGCTAAATGCAGAATTTAGTACTGTAAAACACGAGCAATGAAAGATGTTAAAACATTGTCAACCAGAAGGGACAAATAATGTGCTCTGATCCAAAGGGCATTTTTCGCTCAGTAAATATTTGTACTTTAGTCATTGGTGCCACCTGCAGGTGGAAAGGAGAAGTATAATTAAAAAAAAAAAAAAAAACTTTACCTTACCTTTTAAAAGATCTTAAATAAATTCCAGTGAAAAATGTAAATCATTTAGGCTTGAGTTAATATAGCATATAATATCATATTAAAGTACTTGTTATCTATGATTGCTTATTTAGTACATTATAAAACTATTCAATTCTGATTCTATCTATCTGTATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCATTTTCATAGTGAACACTTACTTTCAATTTATCTCAAAACAAGGACAGGAGTTGTGAGTCAGTAAATGAGTATTAAAGTAACTGGCATTACTTTATGAAAAAGTATTGAAAAGGGCTATTTTCTTGGAAATTTTAAAGTAATCAGTACTTTTCATGCAAGCACAGGATGTCAACATGGCGTCATATTGACGATGTACCCCAACGTACCCCAACGTCATGGGGATGTTGGATTTTGTTGTAAAATGAAAATCGGGTTCATGTCAGAACCCAACATTAGGTCGACGTCATTGTCCAATGTCCAACCTAAAATCAACCAAATATCAATGTCTAATCATGTTACACCTTGATGTTGTGTAGATGTATCATGACATTTATCAGATTTTGGTCACTTTTTAACACAACCTAAAATCAACCAAATATTAACATAATTTGACGTCGTTATTGCAGTCAAATAACGTTGTCCTTAGACGCTGGCTAGACATTGACTTTTGGTCACCTGACATCATGATCTATATTTAACTTAATATCAACATCTTGGTGTTGTGTGCCTGCTGGGTTACTGGTTGCTTAAAAAAGTAATCTGATTACATATTTCATGTTATTTGTAATCCATTAACCAATACACTGCCTACAAACACATAAACAACGATTTATTAACTGTAGAATAATTACAGTTTGATCAATATGCAATGACGTCTTTATAGTGTAGCTTACCTTATAAACTATTAAAGACGAGCCATCGAAACATTAACGAAACATTAACATTCATTTCATTGTAAAAAAAAACTGAAGTAAAGTTATGATATGAAACCTTAATATAACATGTTACATTCAACAGCCACTCTATTATGTTTGAGGATTATTTCCAGCTACTGTATGTTTTTATATATAACTCTGTGACGTGTTGTTATTTGTGTACTAG
Seq C2 exon
TGCTGTCGTGTCCAGACCCGGGCACAGTAGAGCACAGTCGCAGGGTGATGTCGGGGCCGCGTCTCATCGTGGGCTCCACTGTCCAGTACATCTGTAACAAAGGCTACTCGCTGTCAGGAAACAGCCTCCTTTCTTGCTACCACAGAGACTCCACTGGCCCCAAGTGGAGCGAGAAACTGCCCAAATGCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414:ENSDART00000155502:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]