GgaINT1024907 @ galGal4
Intron Retention
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5913531-5914118:-
Coord C1 exon
chr19:5913924-5914118
Coord A exon
chr19:5913670-5913923
Coord C2 exon
chr19:5913531-5913669
Length
254 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGC
5' ss Score
4.7
3' ss Seq
GCTATGGCATGTACCCGCAGCGG
3' ss Score
5.36
Exon sequences
Seq C1 exon
CCTTCGAGCAGGGGCACTGTTATGAGCCCTTCGTCAAGTACGGGAACTTCACAACCAGCGACCCACGGTACCCTGTGGGCACCACGGTGGAGTTCAGCTGTCACCCCGGCTACACGCTGGAGCAAGGCTCCACCATCATCGAGTGCGTTGACCCCAGTGACCCACAGTGGAACGAGACGGAGCCGGCGTGCCGCG
Seq A exon
GTGGGCACCAGAGGTGGGGGGATGTGGGTGGTGGAGCTGAGGGACCGGAGCTGGGATTGGGCCACCACGGATGGTGGAGCCGGCATGGCACGTTGCATGCTGGTGGGTAGGACCACCGTGGGATCCAGAGGCGACGGTGGGTGCTAGATCTGGGGTGCCAAATGGAGGGTGGTGGGGGATGCTGGATCCAGGGTGCCGTGGTGGGTGCCGCGGTGGTGGCTTGCCATGGTGGGTGCTATGGCATGTACCCGCAG
Seq C2 exon
CGGTGTGCAGCGGGGAGCTGATGGACACGGCCGGCGTGGTGCTGTCACCCAACTGGCCAGAGGCATACGGCAAAGGCCAGGACTGCATCTGGGGGCTGCACGTGGAGGAGGACAAGCGCGTCATGCTGGACATCCGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431:ENSGALT00000046159:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGTTATGAGCCCTTCGT
R:
CTTGTCCTCCTCCACGTGCAG
Band lengths:
298-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]