RnoINT0133920 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64870377-64870931:-
Coord C1 exon
chr10:64870737-64870931
Coord A exon
chr10:64870516-64870736
Coord C2 exon
chr10:64870377-64870515
Length
221 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
TGGGCTCCCCTTCCTTGCAGCCG
3' ss Score
10.26
Exon sequences
Seq C1 exon
CCTTCCAGCAAGGACATTGCTATGAGCCCTTTGTCAAATACGGTAACTTCAGCAGCAGCGCACCGTCCTACCCTGTGGGTACGACTGTGGAGTTCAGCTGTGACCCTGGCTACACCCTGGAGCAGGGTTCCATCATCATCGAATGCGTCGACCTCCGTGACCCCCAGTGGAATGAGACAGAACCAGCCTGCCGAG
Seq A exon
GTCAGCAGGCACCAGTGGGTGGGTCTGCCAGGGCAACAAGCAGGGTATAGGGGCCAGCCACAGAACCAGGGCCAGAGGCCCTGCTGAGTGTGATTGATATTTCTCCTAGAGGGAGGAGGTAGGGCCCCCCAGCAGTGGGTGGGTACTCCTGTGGGCAGGTGAAAGCCCTAGAACACCATATTGGAGAGGACGCGCCTTCCCTGGGCTCCCCTTCCTTGCAG
Seq C2 exon
CCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGACATCCGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
PF0043115=CUB=PU(40.7=93.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGTAACTTCAGCAGCAGC
R:
CTCGGATGTCCAGCATGATGC
Band lengths:
295-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]