GgaINT1025703 @ galGal4
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21524895-21525900:-
Coord C1 exon
chr7:21525760-21525900
Coord A exon
chr7:21525052-21525759
Coord C2 exon
chr7:21524895-21525051
Length
708 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATCTGGCGATTTCTGTGCAGGGC
3' ss Score
6.64
Exon sequences
Seq C1 exon
GTTATGCCACTCTCCAGGTTTGCTGGGTGCCTGCCGGTGAAAGAGAAGGGTTGATATTTTGCCCAGGCCCTTAGGTCCTGAACCAAAATGGCAGCTGGCGAGTCCCCTCCCGTAGGAGATGCCTTCATCGACCTGCAGCAG
Seq A exon
GTGAGGTGGGAATCTGGCACCAGCAGTGCCATGTCTATCCCGGGAACTGCCATCAAGGCCGGATGCACTCCCCACGCAGACAGCAAGCTGAGGTCCAGAGAAGGCTGAAGGCTGCTTCCGTGTGCCATTAAGTGGTGGTGGTGGCAAACAGCAGGAGCCTCTGAGAGCACATGGCATCCATAGCCCTGGTGGGATGGGAGCTGTAGGGGCTTCGTGGTGCCAGGGGGCAGCTGGGGGTGTTGTGGGGAGGCACAGCTCTGCTAAAGCCACCTTGCTCTCTCTTTGTGCCCGGCACAGACAGATTTGTCACAGTTGGGCCTCCTCCTGTTTCCATGGAAACTCGGGAGTCCACAACAGCTCAGCACTGGCATTTTGGCTGTGTTGACAGACAATTGTACCAGCTGCAGCTGCTCAGGAGGCAGAAAGGGTAGGTGTCACCTGGTGATTACCCACCAGCAAAAGGCAGAGGAGCACCTGTAGTCTGAAATGGGAGAAAATCAGGCAGGAAGGCCTGAGGAAGGCATGCCAAGGGAAACGGGAGCCCCAGCATTGCAGAGGAGCTGTGCCCAGAAATGAGTAACTGTTCCCCTACCCCGTGGGATGCTGCCTGCTGCTCCTCAGAAGCCCAGCTCCATCTGCAGGGCACGAGAACCTGGAGGATGGTAGGAGTCTGCAGTGTTTGATTGTTATCTGGCGATTTCTGTGCAG
Seq C2 exon
GGCAGAGATCGTGCAGAAAAAGCCTCTCCTGGTGCCGAGGACGATGAGGACTTGGATAAGACTTTATCAATCGAGAGATTTGGGGACCTGATAAGCAAGTCAGCATCAAGCAATCTGGAGAAGCAGAGACGCTGCTACAGTGAGAGAGATTTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.981
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCACTCTCCAGGTTTGC
R:
TCAAAATCTCTCTCACTGTAGCAGC
Band lengths:
294-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]