GgaINT1025712 @ galGal4
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21513301-21514303:-
Coord C1 exon
chr7:21514123-21514303
Coord A exon
chr7:21513437-21514122
Coord C2 exon
chr7:21513301-21513436
Length
686 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCTTCCTCTCCTCCTGACAGGCG
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTGTTTGTGGAGCTGAACGAGCTGGTGGTGGATAAGAACCAGGAGATGCACTGGAGGGAAACAGCCCGCTGGATCAAGTTTGAGGAGGATGTGGAGGAGGACACGGCCAGGTGGGGGAAACCCCATGTGGCTTCATTGTCCTTCCGCAGCCTGCTGGAGCTCAGGAAGACAATTGCCCATG
Seq A exon
GTAAGTCAGAAATTGCTTTGTGCTTCTGGCCAGGATTTGTATATTGCCCTGGGACAAGTTTTGCTGGGCAGCTCCTGTTGCCGTTTGGCTGCTTGCTGAAGACATGCCAACAGTGTCTCTGTTCAGGCTCCTTGTTGGATGTGGGGAGACAGACCATCCCACAGTCTGTTTGCCAGGATATTGCAATAGCCCAAGGATGTCTGAGGTGGCTCCTTGCTCTGCTTTGCTGCCCTCAGGCACGTGGCACTGCAACACCCAGCTGTGCCAGCAGGTCTTGGACCCATGAGGGGAAGGTACTCAAGCTACCAGTGCATCTGGGGTTGGGTGTCTTCACTGTCTTCTCACTGAAGGGAGACATTTTCTCACTGGATCCCCTCAGGGTGAGAGCCTGGAGTGCTCACATCCCACAGGTGGTGGGATACCAAGTGTTTCTTCGGCTCTCAGCCTGCCTACACAGCATCTTATGGTTTCTCTGGAACAAAAGTTTGCATAGAGAGCATGGGATACCTGGACTTGTGGCATTTCTCAGCTGAGAGTGTTTAAGTTAAGAAGGGCTGAGAGGTGCCTCCAGTGGGAAGAGAGCCTGGCGCTTGTGGGGCTGTTACAGGACATCTGTGTTCCCAGAGCACATGTGCAGCAGGGAGTGCTGCACACTAGGAGCAGGGCTCTTCCTCTCCTCCTGACAG
Seq C2 exon
GCGCCGTTCTTCTTGACCTGGAGCAGACCACGCTGCCTGGCATCGCTCACCTCATGGTGGAGACCATGATAATCTCTGACCAGATCAGAGCAGAGGACCGAGCCAACGTGATGCGTGCCCTGCTGCTGAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(11.7=50.8)
A:
NA
C2:
PF075658=Band_3_cyto=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGTGGAGCTGAACGAG
R:
CTTCAGCAGCAGGGCACG
Band lengths:
312-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]