GgaINT1029151 @ galGal4
Intron Retention
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18028186-18030081:-
Coord C1 exon
chr7:18029940-18030081
Coord A exon
chr7:18028291-18029939
Coord C2 exon
chr7:18028186-18028290
Length
1649 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TTATCTGTTTTTCCGCCTAGATA
3' ss Score
8.79
Exon sequences
Seq C1 exon
TTTAAAGCAGAGCGGTAAATTCCCTGGGAACCCGTGGCCTCCTTACAAGAAGAGAACACCGCTACATCCGAGTTACAAAGGTCTCGTAAAACTTTTACACTGTAAAACCTTGCACATTGTGCTGTTCACACTTCTTTACAAG
Seq A exon
GTACAGTCATAATTCTCATTAAGTCCAGTGTTTTACTTTCATTTTGTAGAAAGGAACGCTTAGAATCGTAGTTCTGTTGGTGTTCTTGAATAGTAAGTTTCAAGTTCATGTAACATTTATTTTGTTCTCATGAGGAAATACTTTCAGTTAGAATTCTTCTTGCTAGTTGAGCTAAAAAACATTAAAACATTAAAATGACTGAGGTGGTTAAAATTTCCTTTTTACTGTATTCATTAATTGGTTGTATGACTGCAGAGAGATTTCTTATTTCACATTTATTTTGTAGGTCTAGCATGATGATTATTTCATGAGTGACTACTTCATATTACATGCTCCTAAGTTAGGTATCCAAAGTACATGGGCAGTCCTACTTCAAGGAATACACTCTTAATGATCAGCTTTGCTATTTGACTTGTTGCTTGTTGGTTTTGGATAAAATAATGATTTGTATGGTGTTTTTCTGGCTCCTACTGAAGAGCTGGATGGCAGCAGCAGCGTTTTTAAATGTGTGCAATCTTGATGGCCTTACGTCTGAAGTGGCAAATAAGTCTCAAAAAAGTTGGTTCTAATGTCACTTTCTGGATATGTTCTGTCTTTGATAATATGTTATAGTGCTTGTTTTTCAGGACTAATTTATGCCTTTAAATTTTCTGTAGATAGTTAGCTGTTCTCTTTAAGAGAAACGCATTGTTTTTCAAGAGCACATGCATCAGAGGATGAATCTTTGAGTCTTTTCTGGTACTTGGAAAGTGCTCTCAGGGCAATGTGCTGCAGAAGCAGATGAGGGACTATTGAAAAATGGTTTGATTGAGGCACATCAGTGATTTTCCTGCTAATCTTAAGCTCTTTCATCATTTCACTGTTAAGCTTTTGTCAAGCAGAAAATCTGTTAAATACAGCAGATATAGCAAGAAGTGTGGGGCATTCACAAGGTTCCTATTTCTATTTCTTGTTTTACCTGATTTCTTTCTGTAGTGAAGTGTCTTATAAATTGACAATATATCATTGGCATGAATGAAAACTTAAGAGTTTATCTGAATTCATTCAATAGATTTCACCTTTACGATAGAAAAGTATTTTTTCTCAAAAGCTGACAAATTAGTAGCTTCAGTAAGCAATAGCTTTTGCTATGTTAGGAGTGCAATTTCAAAAATCTATGTGGAAAAATAAAATATCATGAATGTGATAAGACTTCTAAAGTGTTACAATGGAACAACAAAAAAAAAAAACCCTAAGTACTGAAGTTGGAGCTTAGAGTCTACCAAAAATACATTAGGGCTGCAAGTGATGTTCATATTTTTCTGCCTGCCTAATATTTTCCTGGTAATTGATACTCATATCTCATGACACAAGTCTTTGAAAGCACAGTGATTTTATTAAAAATAAAGAAAATAGCATATGTAGCTCAAGGCCTTTTGTAGTCTAAGTAACCTGGAAGGTTGTGCTGAAAGAAAACCTGTAGGTTGTACTTCGTTTTTGTTCATATGAGACTTAAGGTTTCTTTCTTTACCTCCCAATGTAAGTTATAGATGTCTTTGGCAATTTCTTTTATTTTGTGGGTTTTTTCTTTTTTCTTTTTTGTAACTGAGATTGTGAGAATGTAAAAGATAAAAACGTTTTAAGATGTGGTTATCTGTTTTTCCGCCTAG
Seq C2 exon
ATATTAATGGATCATCAGAATTTGTCAGAACACGTCCTTTGTATGGTTTTGTATTTGATTGAACTGGGGTTGGAAAATTCTCCAGAACGCGAATCAGATGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608:ENSGALT00000015660:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAAGCAGAGCGGTAAATTCCCT
R:
TCTTCATCTGATTCGCGTTCTGG
Band lengths:
246-1895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]