GgaINT1030925 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr28:2826849-2827077:-
Coord C1 exon
chr28:2827045-2827077
Coord A exon
chr28:2826961-2827044
Coord C2 exon
chr28:2826849-2826960
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AGCACCCAGCTCTCTTGCACATC
3' ss Score
-3.52
Exon sequences
Seq C1 exon
GCTCAAAAGCAAGAAGTGGGTGAACGAGCAGAG
Seq A exon
GTGGGTGCGGGGGCAGTGGGTCAGCTCGGGCAGGGTGGCCATGCAGTGCCATGAGAGGGTTGGAAGCACCCAGCTCTCTTGCAC
Seq C2 exon
ATCCAGGTACGGTGGCTTCTCCCTGGGCGCTGGTGGCTCTCAGCTCCTGCCATCAGCAGAGGAGGTGAGCAGTGCAGTGCAGGAGCTGAGAGAGCTCTTCAACGTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAAAGCAAGAAGTGGGTGA
R:
CTGGGTGACGTTGAAGAGCTC
Band lengths:
144-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]