GgaINT1031124 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:2761974-2763258:+
Coord C1 exon
chr8:2761974-2762030
Coord A exon
chr8:2762031-2763108
Coord C2 exon
chr8:2763109-2763258
Length
1078 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTTATCTGTACATGTTTCAGAGA
3' ss Score
7.05
Exon sequences
Seq C1 exon
AACGGCACCATGGGAAGCTTTTCGACAACTCACTGGAACCAAGCAGACTCTGAACAG
Seq A exon
GTAAATATTTTGGTTTTGGAGGTAAAATTCAACATGGAACAATTTTCTTCTGCAATCAAGTTTCTAGTTTTGCTATTCTATATCTAATGCACTGTTTTTAATACTGCTGCAATAAAAACGTTTACCTTAGATCCATTAACCTTGGAACAAAATGTTTCTGTGCTGAGGGTGAGGAAAAAATAGAAACTGAAGACAAACAAATTGTGTCAAGATACTAAAAAAGTAGAAAGGAACACTAACAAGCCCCAGTATCTAGAGATCTTAGCTCCAGAAGGCAAGAGACAGAGCATATTTGTCACTTGTATTTTCTGATAAAGATACGTATACCTCCACTATATCTAGTAAAGCCCATGTAGATGGCAACTTGTTTCTTTGTAAAATTTCAGTAAAGGAAAAGGTTTGCAGAGGCCCATAGTCTGCAAGTTTTGGTGTTAGTAAGGTTTGGAATATTTCCTCTAAAAATGCATTTGGATAAAGAACGTTAGCAGCACTTGGTAAAGGACTGAATGATTAATAATTTCTTTTCTTGCACTACAGAAGAGGATAGTATACAAGACACAGTAACTAAAACACCTTCTGGGTAAATACGGAAGACAACAAACATGAGCAAACGCAGAGAAAAATCTTTCTTATAGATAAAGTGACATAAATCAAATGAGTCCTGCCTACATAAGTTATTTTCAATTATTCTTTACCACTTCAAACAGGAACCAGACAATCTGTGAAGGAGCATCTGAAGAGACTGCCTTTATGAATAGAATGAGCATGCTGTTGGTTTCACCTGTCATCTTTCAATTGCAGTGAATCTACTTCTTATGGTGTGAATTTAACCCAATTCCACCATGTTTCTCCTGGTGTTGAAGTACATAATCCAACTGTTACTTAGCAGAAAATGCTCTCTATTTCATCAAAACTATCTTCATATTTACAGTATTAATAAGCTTTGATCTCGGATACTTCTTTCAGATTAGCCCATGGAACCTCTCTAATAGATATTTGTAATTTCTACTGCTAAATGATAATGCTCTGATTAATAAGAATGGTTTTAAATTATTCTCTTTATCTGTACATGTTTCAG
Seq C2 exon
AGAGAGTCAGCAATCATCAGAACAATGGCAGAAAATGTATGGCAGATGCTCTGGTAATGAAGTGTTTCACATTAACCTGGAAGAAAGTACTTTTTTTGCTGAATATGAAGGGAAAAGCTTCACATATGCTTCTTTCCATGCACATAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451:ENSGALT00000003864:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGCACCATGGGAAGCTT
R:
TTTTATGTGCATGGAAAGAAGCA
Band lengths:
206-1284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]