GgaINT1031354 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:440583-440874:+
Coord C1 exon
chr2:440583-440629
Coord A exon
chr2:440630-440709
Coord C2 exon
chr2:440710-440874
Length
80 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CTTGCTCGTTCCCCCTGCAGTGG
3' ss Score
9.95
Exon sequences
Seq C1 exon
CGTTTGCATCCGTGGCACCTTCAACTGCTCGCAGGAGGAGTGCAATG
Seq A exon
GTGAGGGCATCCCGTCCTCATCCCCGTGCCCGCGCTGTGATCCCTGTGTCACAGCTGGGCCTTGCTCGTTCCCCCTGCAG
Seq C2 exon
TGGATTGCCTGTGGTCTCCGTGGTCGCCCTGGTCCCCCTGCTCGGTGACGTGTGGGATGGGTGAGCGGCTCTCACACCGGCACCCACTGCGGCAGCGCCTCTATGAGGGGGCTGAGTGCCTGGGGCCCCCCGTGCGCCGGGCTGCCTGCCACCTCCCCGACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000007871:97
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCAGGAGGAGTGCAATG
R:
CAGTCGGGGAGGTGGCAG
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]