HsaALTA0000261-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000106624 | AEBP1
Description
AE binding protein 1 [Source:HGNC Symbol;Acc:303]
Coordinates
chr7:44151453-44151920:+
Coord C1 exon
chr7:44151453-44151649
Coord A exon
chr7:44151741-44151804
Coord C2 exon
chr7:44151805-44151920
Length
64 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
ACCCTGCTGGCTCCCCACAGGGC
3' ss Score
10.72
Exon sequences
Seq C1 exon
GGGAGCCCGAGTTCCGCTACACTGCTGGGATCCATGGCAACGAGGTGCTGGGCCGAGAGCTGTTGCTGCTGCTCATGCAGTACCTGTGCCGAGAGTACCGCGATGGGAACCCACGTGTGCGCAGCCTGGTGCAGGACACACGCATCCACCTGGTGCCCTCACTGAACCCTGATGGCTACGAGGTGGCAGCGCAGATG
Seq A exon
GGCTCAGAGTTTGGGAACTGGGCGCTGGGACTGTGGACTGAGGAGGGCTTTGACATCTTTGAAG
Seq C2 exon
ATTTCCCGGATCTCAACTCTGTGCTCTGGGGAGCTGAGGAGAGGAAATGGGTCCCCTACCGGGTCCCCAACAATAACTTGCCCATCCCTGAACGCTACCTTTCGCCAGATGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106624-22-25,22-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.9=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAACCCTGATGGCTACGA
R:
CATCTGGCGAAAGGTAGCGTT
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)