RnoALTA0002656-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013720 | Aebp1
Description
AE binding protein 1 [Source:RGD Symbol;Acc:1306922]
Coordinates
chr14:86108676-86109134:+
Coord C1 exon
chr14:86108676-86108872
Coord A exon
chr14:86108955-86108963
Coord C2 exon
chr14:86108964-86109134
Length
9 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
3' ss Seq
TCCCATGGCTTTTCTTGCAGGGC
3' ss Score
9.86
Exon sequences
Seq C1 exon
GGGAGCCTGAGTTCCGCTACACAGCCGGCATGCACGGCAATGAGGTGCTGGGCCGAGAGCTGCTGTTACTGCTCATGCAGTACCTGTGTCACGAGTACCGGGATGGGAACCCCAGAGTGCGTAACCTGGTGCAGGACACGCGCATCCACCTGGTGCCTTCGCTGAACCCTGACGGCTACGAGGTGGCAGCGCAGATG
Seq A exon
GGCTCAGAG
Seq C2 exon
TTTGGGAACTGGGCACTGGGGCTGTGGACTGAGGAGGGCTTTGACATCTTCGAGGATTTCCCAGATCTCAACTCTGTGCTCTGGGCAGCTGAGGAGAAGAAATGGGTCCCCTACAGGGTCCCGAACAATAACTTGCCAATCCCTGAACGTTACCTGTCCCCAGATGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013720-23-25,23-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.9=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACCCTGACGGCTACGAG
R:
TCCTCGAAGATGTCAAAGCCC
Band lengths:
92-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]