MmuALTA1006897-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020473 | Aebp1
Description
AE binding protein 1 [Source:MGI Symbol;Acc:MGI:1197012]
Coordinates
chr11:5869414-5869886:+
Coord C1 exon
chr11:5869414-5869610
Coord A exon
NA
Coord C2 exon
chr11:5869707-5869886
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGC
5' ss Score
6.85
3' ss Seq
ACCGATGGTTTTGCTTGCAGGGC
3' ss Score
8.76
Exon sequences
Seq C1 exon
GGGAGCCCGAGTTCCGCTACACAGCCGGGATCCACGGCAATGAGGTGCTAGGCCGAGAGCTCCTGCTCCTGCTCATGCAATACCTATGCCAGGAGTACCGCGATGGGAACCCGAGAGTGCGCAACCTGGTGCAGGACACACGCATCCACCTGGTGCCCTCGCTGAACCCTGATGGCTATGAGGTGGCAGCGCAGATG
Seq A exon
NA
Seq C2 exon
GGCTCAGAGTTTGGGAACTGGGCACTGGGGCTGTGGACTGAGGAGGGCTTTGACATCTTCGAGGACTTCCCAGATCTCAACTCTGTGCTCTGGGCAGCTGAGGAGAAGAAATGGGTCCCCTACAGGGTCCCAAACAATAACTTGCCAATCCCTGAACGTTACCTGTCCCCAGATGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020473-27-46,27-45-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.9=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAACCCTGATGGCTATG
R:
TCCTCGAAGATGTCAAAGCCC
Band lengths:
103-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types