HsaALTA0000692-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000197070 | ARRDC1
Description
arrestin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28633]
Coordinates
chr9:137612896-137613510:+
Coord C1 exon
chr9:137612896-137613006
Coord A exon
NA
Coord C2 exon
chr9:137613460-137613510
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CCTCCCTCCTGTCTCTGCAGGGA
3' ss Score
12.66
Exon sequences
Seq C1 exon
CCATCCGGGTGACCTGCATAGGTTCCTGCGGGGTCTCCAACAAGGCTAATGACACAGCGTGGGTAGTGGAGGAGGGTTACTTCAACAGTTCCCTGTCGCTGGCAGACAAGG
Seq A exon
NA
Seq C2 exon
GGAGCCTGCCCGCTGGAGAGCACAGCTTCCCCTTCCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197070-2-7,2-6,2-5-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PD(58.0=55.3)
A:
NA
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTAATGACACAGCGTGG
R:
AGGAACTGGAAGGGGAAGCTG
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains