RnoALTA0004642-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007622 | Arrdc1
Description
arrestin domain containing 1 [Source:RGD Symbol;Acc:1309961]
Coordinates
chr3:2131657-2132396:-
Coord C1 exon
chr3:2132286-2132396
Coord A exon
chr3:2131704-2131707
Coord C2 exon
chr3:2131657-2131703
Length
4 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCTCCTTCTTGTCTCTGTAGGAA
3' ss Score
12.61
Exon sequences
Seq C1 exon
CTATCCGGGTGACCTGCATGGGTTCCTGTGGGGTCTCCAACAAGGCCAACGATGGGGCATGGGTGGTGGAGGAGAGCTACTTCAACAGCTCCCTATCACTGGCTGACAAGG
Seq A exon
GAAG
Seq C2 exon
TCTGCCACCTGGAGAGCACAACTTCCCTTTTCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007622-7-6,7-5,7-4,7-3-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(27.8=100)
A:
NA
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCAACAAGGCCAACGAT
R:
GAAGTTGTGCTCTCCAGGTGG
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]