BtaALTA0003500-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012147 | ARRDC1
Description
Bos taurus arrestin domain containing 1 (ARRDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080365]
Coordinates
chr11:105543445-105543887:-
Coord C1 exon
chr11:105543777-105543887
Coord A exon
NA
Coord C2 exon
chr11:105543445-105543495
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCCACCTCTCGTGTCCTCAGGGA
3' ss Score
11.33
Exon sequences
Seq C1 exon
CCATCCGCGTGACCTGCACGGGGTCCTGCAGGGTCTCCAACAAGGCCAACGACTCGGCCTGGGTGGTGGAGGAGAGCTACTTCAACAGTGCCCTGTCTCTGGCCGACAAGG
Seq A exon
NA
Seq C2 exon
GGAGCCTGCCTGCTGGAGAGCACAGCTTCCCCTTCCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012147-18-5,18-4,18-3-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(27.8=100)
A:
NA
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGCGTGACCTGCAC
R:
GAACTGGAAGGGGAAGCTGTG
Band lengths:
151-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development