MmuALTA0002076-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24782646-24783359:-
Coord C1 exon
chr2:24783249-24783359
Coord A exon
chr2:24782693-24782696
Coord C2 exon
chr2:24782646-24782692
Length
4 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCTCCTTTTTGTCTCTGTAGGAA
3' ss Score
12.56
Exon sequences
Seq C1 exon
CTATCCGGGTGACCTGCATGGGTTCCTGTGGGGTCTCCACCAAGGCCAACGATGGGGCATGGGTGGTGGAGGAGAGCTACTTCAACAGCTCCCTGTCACTGGCTGACAAGG
Seq A exon
GAAG
Seq C2 exon
TCTGCCGGCTGGAGAGCACAACTTCCCTTTTCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PU(23.5=32.4)
A:
NA
C2:
PF0033924=Arrestin_N=FE(16.7=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCAAGGCCAACGATG
R:
GGAAGTTGTGCTCTCCAGCC
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: