HsaALTA0001257-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000154479 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:169681007-169694433:-
Coord C1 exon
chr2:169694261-169694433
Coord A exon
chr2:169681177-169681181
Coord C2 exon
chr2:169681007-169681176
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TATCTGCCTCTTCTACCTAGCAA
3' ss Score
6.03
Exon sequences
Seq C1 exon
ACTTCCGGCGGCGTTGCCAAGCAACCGCGTGGTACGAGTAACAACTCCACCGGCTGGCGTCCGCGGCGCTTGGCGCCACAGTCACTTTTCCAGATCTAGGAGCATCATGGACACCTCGTCAGAGATGCTGGTACGGTTTGGACGGCGCTGTGGACGGGCGAAGGAAAGTACAG
Seq A exon
CAAAG
Seq C2 exon
TAGATCTCCAGCAGGTCACCATAATTCCACACGATGAGTGGAAAAGGATTCAAGATAGCCTTGACAGGTTGACAAGAGAAGCAGCATGCCTCCGTGCAGAAAGAAAGGCAAAGAAAGAAATGCATTTGCGATCTCAAGAAGTGGTAAAACACTGGACTAATACATATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154479-0-8,0-7,0-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATCATGGACACCTCGTC
R:
ATGGTGACCTGCTGGAGATCT
Band lengths:
96-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains