HsaALTA0001690-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000164045 | CDC25A
Description
cell division cycle 25 homolog A (S. pombe) [Source:HGNC Symbol;Acc:1725]
Coordinates
chr3:48224419-48225326:-
Coord C1 exon
chr3:48225290-48225326
Coord A exon
NA
Coord C2 exon
chr3:48224419-48224517
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CTTTTTTACTTTGATAGCAGAAG
3' ss Score
2.58
Exon sequences
Seq C1 exon
CCTTGAAAATCCTATGAGAAGAATACATTCCCTACCT
Seq A exon
NA
Seq C2 exon
AAGCTGTTGGGATGTAGTCCAGCTCTGAAGAGGAGCCATTCTGATTCTCTTGACCATGACATCTTTCAGCTCATCGACCCAGATGAGAACAAGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164045-4-7,4-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.885 A=NA C2=0.519
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(20.0=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(19.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGAGAAGAATACATTCCCTACC
R:
GGGTCGATGAGCTGAAAGATGT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)