RnoALTA0007863-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117956855-117957589:+
Coord C1 exon
chr8:117956855-117956891
Coord A exon
NA
Coord C2 exon
chr8:117957491-117957589
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CTGTTTTACTTTGGCAGCAGAAG
3' ss Score
2.9
Exon sequences
Seq C1 exon
CCTTGAAATTTCCCTGAGGAGAATAAATTGCCTACCT
Seq A exon
NA
Seq C2 exon
AAGCTCTTGGGGTGTAGCCCAGCGCTAAAGAGGAGCCATTCTGATTCTCTAGACCACGACATCTTTCAACTCATTGACCAGGATGAAAATAAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737-5-6,5-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.294
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(4.9=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGAGGAGAATAAATTGCCT
R:
TGAGTTGAAAGATGTCGTGGTCT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]