HsaALTA0002927-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:24860]
Coordinates
chr9:140331321-140331761:-
Coord C1 exon
chr9:140331611-140331761
Coord A exon
chr9:140331443-140331480
Coord C2 exon
chr9:140331321-140331442
Length
38 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCTGGTCCTCTGTGCCCAGCCG
3' ss Score
6.61
Exon sequences
Seq C1 exon
GGCCTGGAATCTCCTCCTACACTTCTAATGCTGCACAGGCTGGTGAGAGCCTGCAGGGCTGCTTGGAGGAGGCGCTGGTGCTGATCCCAGAGGCCCAGCATCGGAAAACACCCACGTTCCTGGGGGCCACGGCTGGCATGAGGTTGCTCAG
Seq A exon
CCGGAAGAACAGCTCTCAGGCCAGGGACATCTTTGCAG
Seq C2 exon
CAGTCACCCAGGTCCTGGGCCGGTCTCCCGTGGACTTTTGGGGTGCCGAGCTCCTGGCCGGGCAGGCCGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGGCTTGGGGACGCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-3-6,3-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(15.5=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(3.9=9.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCATGAGGTTGCTCAG
R:
AGTGATCCAACCAAAGGCACC
Band lengths:
112-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)