MmuALTA0006424-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:24938448-24938849:+
Coord C1 exon
chr2:24938448-24938598
Coord A exon
chr2:24938740-24938743
Coord C2 exon
chr2:24938744-24938849
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TCATGGTCCTTTCTGCCCAGCCA
3' ss Score
4.83
Exon sequences
Seq C1 exon
GACCTGGAATCTCTTCCTATACCTCTGACCCGACACAGGCTGGGGAAAGCCTGAAGAGCTGCCTGGAGGAGGCGCTGGCGTTGATCCCACAGGCCCAGCATCCAGAGACGCCCACATTCTTGGGGTCCACAGCAGGAATGAGGCTGCTCAG
Seq A exon
CCAG
Seq C2 exon
AAGAACAGCTCTCAGGCAAGAGACATCCTAGCTGCAGTCTCCCAGACACTAAGCAAGTCTCCTGTGGATTTTTGGGGTGCTAAGATCTTGGCTGGGCAGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813-4-7,4-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.6=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGAGACGCCCACATTC
R:
CTGGGAGACTGCAGCTAGGAT
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: