RnoALTA0013902-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2291446-2291881:+
Coord C1 exon
chr3:2291446-2291596
Coord A exon
chr3:2291722-2291725
Coord C2 exon
chr3:2291726-2291881
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
CCGTGATCCTTTCTGCCCAGCCA
3' ss Score
4.03
Exon sequences
Seq C1 exon
GACCGGGAATCTCTTCCTACACCTCTGACCCGACACAGGCTGGGGAGAGCCTGAAGAGCTGCCTGCAGGAGGCGCTGGCACTGATCCCACAGACCCAGCATCCAGTGACGCCCACATTCCTGGGGGCCACAGCAGGAATGAGGCTGCTCAG
Seq A exon
CCAG
Seq C2 exon
AAGAACAGCTCTCAGGCTCAAGACATCCTAGCTGCAGTCTCCCAGACACTGAGCAGGGCTCCGGTGGACTTTTGGGGAGCCAGGATCCTGGCTGGGCAGGATGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGTCCTGGGAATGCTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239-5-8,5-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCCACAGACCCAGCATC
R:
TGTCTTGAGCCTGAGAGCTGT
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]