HsaALTA0004455-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000157551 | KCNJ15
Description
potassium voltage-gated channel subfamily J member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
Coordinates
chr21:38256743-38257185:+
Coord C1 exon
chr21:38256743-38256787
Coord A exon
chr21:38257046-38257103
Coord C2 exon
chr21:38257104-38257185
Length
58 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
AACTTGTTTTTGACTGACAGTGA
3' ss Score
5.45
Exon sequences
Seq C1 exon
GTGTTTGGAGAGCCCGGACTGGATGCCCACTAGAATCCTGTGCTG
Seq A exon
TGAACAGTGAGAGAGTTTTCTTCATTTTGAGGAACCCTAAACACCTATCTTTCCCAAG
Seq C2 exon
GCAACCTGTCTGGACTGAGCATTTCTCTGACTTGACATAACTTCCCATCCAGCCAGGAGTCTGCACTCTTCAGTCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157551-12-11,12-10,12-8-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGGAGAGCCCGGACTG
R:
TGCAAAGACTGAAGAGTGCAGA
Band lengths:
125-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains