MmuALTA0009528-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000062609 | Kcnj15
Description
potassium inwardly-rectifying channel, subfamily J, member 15 [Source:MGI Symbol;Acc:MGI:1310000]
Coordinates
chr16:95257558-95258374:+
Coord C1 exon
chr16:95257558-95257734
Coord A exon
chr16:95258247-95258350
Coord C2 exon
chr16:95258351-95258374
Length
104 bp
Sequences
Splice sites
5' ss Seq
CCGGTCTGT
5' ss Score
4.78
3' ss Seq
AACTTGTTTTTGACTGACAGTGA
3' ss Score
5.45
Exon sequences
Seq C1 exon
ATCTGTTTGTTTATAGTTTACTTAAGCAAAGGGACCTTTAAAAAACGGACTTTGATAAGAGGGGACAAAGTTTCTTCAGAAATGAACCGGAGTTCCTTAGTAAGAACTTCAGTTTCTTTTATACACAGGTGCCCGGAGAACTGGGGAGTCCTTGCCATTCCAAGCCGCCCTGTGCCG
Seq A exon
TGAACAGTAAGACTGGTTCTTCACTTTGAAGAACCCTCAGCACCTACCTTTGCAAGGCACCCTGGATCACTTCCTTGCCTGGTCTTAATTTCCCACCCACCCAG
Seq C2 exon
GAGCCTGCACTGGGCACTCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062609-0-6,0-4,0-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types