HsaALTA0005123-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF like domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr15:65909034-66082468:-
Coord C1 exon
chr15:66082425-66082468
Coord A exon
chr15:65909122-65909135
Coord C2 exon
chr15:65909034-65909121
Length
14 bp
Sequences
Splice sites
5' ss Seq
TTAGTAGAG
5' ss Score
-12.4
3' ss Seq
CCTGTCATTCCTCTCACTAGACT
3' ss Score
8.07
Exon sequences
Seq C1 exon
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA
Seq A exon
ACTCCCATTTCCAG
Seq C2 exon
ATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCGCCCCGCTGAGCCACACTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890-10-57,10-56-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development