HsaALTA0005123-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:29635]
Coordinates
chr15:66201413-66202144:-
Coord C1 exon
chr15:66202078-66202144
Coord A exon
chr15:66201460-66201473
Coord C2 exon
chr15:66201413-66201459
Length
14 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
CCTGTCATTCCTCTCACTAGACT
3' ss Score
8.07
Exon sequences
Seq C1 exon
CTCAGTAACAAGTCCCTTGACAGAGACACAGCAGGCTGGACCCCCTACAGCTATGTGAACGTGTTAG
Seq A exon
ACTCCCATTTCCAG
Seq C2 exon
ATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890-33-34,33-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTGACAGAGACACAGCA
R:
CAATGTAGAAGTCCTCGGGCG
Band lengths:
101-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)