MmuALTA0010820-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64545114-64545715:+
Coord C1 exon
chr9:64545114-64545180
Coord A exon
chr9:64545614-64545627
Coord C2 exon
chr9:64545628-64545715
Length
14 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
CCTGTCATTCCTCTCACTAGACT
3' ss Score
8.07
Exon sequences
Seq C1 exon
CTCAGTAACAAGTCCCTTGACAGAGACACAGCAGGCTGGACCCCCTACAGCTATGTGAACGTGTTAG
Seq A exon
ACTCCCATTTCCAG
Seq C2 exon
ATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCGCCATGCTGAGCCACACTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466-31-30,31-29-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.248
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCCCTACAGCTATGTG
R:
GCGGCTGAGGTGTCTAAGTTC
Band lengths:
97-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: