HsaALTA0006175-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000148459 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:17759]
Coordinates
chr10:26998567-27009288:+
Coord C1 exon
chr10:26998567-26998697
Coord A exon
chr10:27009064-27009146
Coord C2 exon
chr10:27009147-27009288
Length
83 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
AATAACATTCTTTATCCTAGATC
3' ss Score
6.83
Exon sequences
Seq C1 exon
GAACTGCTTATATCAACATCAGAACTTAAGGAAATGTCTGAGTACTACTTTGATGGGAAAGGGAAAGCCTTTCGACCAATTATTGTGGCGCTAATGGCCCGAGCATGCAATATTCATCATAACAACTCCCG
Seq A exon
ATCCGATGTCCAGTTTTCACAAGCTGATTGCTGAGAAGGTTCTAGGCGGCGTCTGTTAAAAAGCATTGCTTTCTGTTAATTAG
Seq C2 exon
ACATGTGCAAGCCAGCCAGCGCGCCATAGCCTTAATTGCAGAAATGATCCACACTGCTAGTCTGGTTCACGATGACGTTATTGACGATGCAAGTTCTCGAAGAGGAAAACACACAGTTAATAAGATCTGGGGTGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148459-5-7,5-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=PU(13.7=81.8)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAGGGAAAGCCTTTCG
R:
CCTCTTCGAGAACTTGCATCGT
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)