HsaALTA0006175-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000148459 | PDSS1
Description
decaprenyl diphosphate synthase subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr10:26709638-26720359:+
Coord C1 exon
chr10:26709638-26709768
Coord A exon
chr10:26720135-26720217
Coord C2 exon
chr10:26720218-26720359
Length
83 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
AATAACATTCTTTATCCTAGATC
3' ss Score
6.83
Exon sequences
Seq C1 exon
GAACTGCTTATATCAACATCAGAACTTAAGGAAATGTCTGAGTACTACTTTGATGGGAAAGGGAAAGCCTTTCGACCAATTATTGTGGCGCTAATGGCCCGAGCATGCAATATTCATCATAACAACTCCCG
Seq A exon
ATCCGATGTCCAGTTTTCACAAGCTGATTGCTGAGAAGGTTCTAGGCGGCGTCTGTTAAAAAGCATTGCTTTCTGTTAATTAG
Seq C2 exon
ACATGTGCAAGCCAGCCAGCGCGCCATAGCCTTAATTGCAGAAATGATCCACACTGCTAGTCTGGTTCACGATGACGTTATTGACGATGCAAGTTCTCGAAGAGGAAAACACACAGTTAATAAGATCTGGGGTGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148459-10-9,10-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=PU(13.7=81.8)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAGGGAAAGCCTTTCG
R:
CCTCTTCGAGAACTTGCATCGT
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development