HsaALTA0007207-2/3 @ hg19
Alternative 3'ss
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:21148]
Coordinates
chr3:49742083-49742606:+
Coord C1 exon
chr3:49742083-49742189
Coord A exon
chr3:49742515-49742519
Coord C2 exon
chr3:49742520-49742606
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
3' ss Seq
CGAGCCAACCGCTTCCTCAGCAC
3' ss Score
1.65
Exon sequences
Seq C1 exon
ATGACCTTGCTTCCAAAGCCAACATTGTGATCGACCCACTGGAGCTCCAGTCAACCGCCATGGATGACCTAGATGAGGATGAGGAGCCAGCCCCAGCTATGGCCCAG
Seq A exon
CACAG
Seq C2 exon
CGGCTGTGAGCCTCATGACCCCACGGCGGCCTCTGAGCACCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGTGGAGCAGAGGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068-26-26,26-25,26-24-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.472 A=NA C2=0.473
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGCCATGGATGACCTAGA
R:
ACTTTCTCCGAGGTGCTCAGA
Band lengths:
107-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)