BtaALTA0025247-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51067364-51068036:-
Coord C1 exon
chr22:51067930-51068036
Coord A exon
NA
Coord C2 exon
chr22:51067364-51067464
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
3' ss Seq
CGAGCCAACCGCTTCCTCAGCAC
3' ss Score
1.65
Exon sequences
Seq C1 exon
ATGACCTTGCCTCCAAGGCCAACATCCTGATCGACCCGATGGAGCTCCAGGCGACCACCATGGATGACCTGGACGAGGACGAGGAGCCAGCCCCAGCTGCGGCCCAG
Seq A exon
NA
Seq C2 exon
CACCGCAGCTGTGAGCCTGATGACCCCACGGCGGCCCCTGAGTGCCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGCAGAGCAGAGGACCCGTGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588-22-34,22-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.472 A=NA C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAAGGCCAACATCCTGA
R:
GTGCGGACCTTCACTTTCTCC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development