BtaINT0125529 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51067364-51068036:-
Coord C1 exon
chr22:51067930-51068036
Coord A exon
chr22:51067563-51067929
Coord C2 exon
chr22:51067364-51067562
Length
367 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
3' ss Seq
GCCTCCTCTCTCCACCGCAGCGC
3' ss Score
10.05
Exon sequences
Seq C1 exon
ATGACCTTGCCTCCAAGGCCAACATCCTGATCGACCCGATGGAGCTCCAGGCGACCACCATGGATGACCTGGACGAGGACGAGGAGCCAGCCCCAGCTGCGGCCCAG
Seq A exon
GTGCCGCGGTAGGGGCAGGCGGGGGCTTTGTGTTGGGCTGTCCCTCTAGCATCAGGGCTGGAGTGTCACACAGGCCATCTCCCCATCCATGCTGGCAAGGAGCTTGTCCCCCGGCAGGGTCCCGTGCTGTAGGGGAGGCGTGGAGGGCCGGTGTGGTGGGAGGGCTGCCAGCTGCTGAGGCCGTATGAGACCCCGGGCCTTGAGAGGCACAGTGAAGGCTGGGCGGGGGCAGTTGGAGGACGAGGTGCAGCCATGCGGTAAACGGGGCCCTGTGGGGTCTATCCCCCGCCCACGAGTCAAGGGAGCCCCGAGCGGGCCCAGGCCCTGGGATTGTTGAGTGGAGTCTGGCCTCCTCTCTCCACCGCAG
Seq C2 exon
CGCCCCATGCAGGCCCTGGCCGTGGGGGGCGCGCTGCCCCTGCCTCGGCCCGGCTGGCTCAGTTCTCCAACCCTGGGCCGAGCCAACCGCTTCCTCAGCACCGCAGCTGTGAGCCTGATGACCCCACGGCGGCCCCTGAGTGCCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGCAGAGCAGAGGACCCGTGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.472 A=NA C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGCCAACATCCTGATCG
R:
TGTCCTCACGGGTCCTCTG
Band lengths:
294-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]