DreINT0127502 @ danRer10
Intron Retention
Gene
ENSDARG00000031269 | rnf123
Description
ring finger protein 123 [Source:ZFIN;Acc:ZDB-GENE-050208-529]
Coordinates
chr22:34572850-34576661:-
Coord C1 exon
chr22:34576561-34576661
Coord A exon
chr22:34573043-34576560
Coord C2 exon
chr22:34572850-34573042
Length
3518 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CGTGTGTTTGGAATCTGCAGAGA
3' ss Score
6.05
Exon sequences
Seq C1 exon
ATGACTTGGCAGCAAAGGCCAACATTATTATAGACCCAGCAGAGATCCAGGCTGTTTCAATGGATGACTTGGATGAAAATGAGGAAACTGGAGCTGCACAG
Seq A exon
GTACAGAAATCACTGCCAAGAGTCTGTTCTTTAAAAACATACAGTTAAAGTCAGAATTATTAGCCACAGAATTATTCCCCCAACTTTCTGTTTAACCGATTTTTACACATATAACAGTGGTTTGTTCTTTAGACAGTGGAAAAATAATAGCTTAACAGATGATAACTGTAACAAAATGTATATTTTTGTATTCATATTAACAACAACAGATGATAACTATAATGATAACTATTTTAGCATCCACTCCAACAGACGATAACTGTAATTATACTGATATTTTCATCCACACAACGATACAGATATTTCCATTCACATCAACAGGCAATAATTGTAACTTTACCTATATTTTCATCCACACAACGATACCGATATTTTCATTTACACCAACAGACGATAAATGTAACTACACTGATATTTTTATTCACACCATCAGACAAAACTGTAACAATACCGATATTTTCATCCACACGAACAGACGATAACTGTAACGATACCGATATTTTCATCCACACAAACAGACGATAACTGTAACGATACCAATATTTTCATCCACACCACAGACGATAACTGTAATGATACTGATATTTTCATCCACACGAACAGACAATAACTGTAATGATACCAATATTTCTATCCACACCAACAGATGATACTGTAACGATACCAATATTTCCATCCACACCAACAGACGATAACTGTGATGATACCAATATTTTCATTCACACCAACAGACAATAACTGTAACTATACCGATATTTTCACCCCTACTAACAGACACTAACTGTAATGATACCGATATTTTCATCTACACCAATAGACGGTAACTGTAATGATACCGATATTTTATCCTCACCAACAGACAATAACTGTAACTACCGATATTTTTATCCACACTAACAGACGAAAACTGTAATGACACAGATATTTTCATCCACACAAACAGAAGATAACTGAAACTGTACTGATATTGTCATCCACATAAACAGACGATAACTGTAACGATACTTATATTTTCATCCACACCAACAGACGATAACTGTAATTATACCAATATTTTTATCCACACTAACAGACGAAAACTGTAATGAAACCGATATTTTCATTCACACAAACAGAAGATAACTGAAACTGTACGGATATTGTCATCCACATAAACAGACGATAACTGTAATTATACCAATAATTTTATCCACACTAACAGACAATAATGATTCCGATATTTTCACCCCTACCAACAGAGAATAACTGTAATGATACCGATATTTTCACCCCTACTTACAGACAATAACAGTAATGATACCGATATTTTCATTCACACCAACAGACGATAACTGTAACGATACCGATATTTCCATCCACACCAACAGATAACCGTAATGATAACTATATTTTCATCGACACTAACAGACGATAACTGTAATGATACCAATATTTTCATCCACACTAACAGACAATAGCCCCTTTCACACATACAGACCTTTCCGGAAAATTGCCGGCAATTCTCCGGAAAGGTTGTATGTGTGAACAGGTCCTTTTTGAAAATACCGGTAAATTCGTTCTGGCTATTTTCCGGAAAGAGAAGTTGTAACATTACCGGCAATTTGCCGGAATGCTGCGCTGTGTGAATGCAGAAGGAAGATTCCCGTAATAAGCGCATGCACGTCTAGAACGTGCTGACGTGAGACGTCTGCTTTAGCCAATCACAACAGTCAGACGCATTTACGTCCGCGCGGTTTGTGAGAATAAAAGCCTTTGAATATTTTTCCAGACACATTTAGCTGCTAGAAGTTAGTCAGATCACATTTATATGTTCTTCTTAATGCCAACTGTGTAAATAATCATCGATGAGATGCCTATGATAAGCCGTTGTTTGTTTACCTTCAAGCTTTGCGTGCGCCTATGAGCGCCTGCACACGCACATATTATGAACATCTCGACATGCGAAAGTGATCCTGCGAAAGTTGTTCACAATATTGATCATCCACAGAGTCTGTAATTTAGTCAAATGTTTACAAATACAAGTGCAGCCGTTTAAAGCTCATTTGTGGTGAATGATGTCAGAATTTACCGGTATTTTGGAATGGATGTGTGAATGCTCTTTTCCGGAAAATTTCTGTAACGTCCTCGCCTGTGTGAACAGCGCTTTTTTGAATATACCGGTAAAGTCGTTCCGGAAATTTTCCGGATATTTACCGGTATCACTGTGTGAAAGGGGCTATTAACTCTAATGATACTTATATTTTCACCCCTACTAACAGACAATAATTATAATGATACCGATATTTTCATCCACACCAACAGATGATAACAGTTACGATACTGATATTTCTATCCACGCCAACAGACGATAACTGTAATGATAACCATATTTTCATCAACACTAACAGATGAGTCTGAGTCTGGTTCTCTCAAGGTTTTTTTTCTTCACTCCTATCAGGTGAAGTTTTTTTTTCCCTCTCCGCTGTCGCCACTGGCTCACATGGTTCAGGATTGGTAGAGCTACGCATCGATGAATTTGCTCTTCAGTGTTTGAACTCTCAGTAATGATTTTAAATCACACTGAACTGAGCTAAACTGAACTGAACTTAAACACTAAAAACTGAACTACACTGTTCCAGTTACTATGACCATTTATGTGAAGCTGCTTTGACACAATCTACATTGTAAAAGCGCTATACAAATAAAGCTGAATTGAATTGAATGATAACTGTAACGATACCGATATTTTCATTCACACCAACAGACGAAAACTGTAACTATACTGATATTTTCACCCCTACTAAAAGACAATAACTGTAATGATACCGAAATTTTCATCCACACTAAGAGACAATAACTGTAATGATAACGATATTTTCACCTACACTAACAGACGATAACGATATTTTCACCTACACTAACAGACGATAACGATATTTTCACCTACACTAACAGACGATAACTGTAATGATAACGATATTTTCATCCACACCAACAGACAATAACTGTAATGATACCAATATTTTCATCCAACTGTAGCAATGTTTCATCCAACATTCAAACTGTAATTACACAGAAAACTTTATTATTGTTTACACAATAAAATTTTTTTTTTGGTCATGATAGTTACGTTCCTTGTCCTGAACACCCTGAAATTGCAGTACAAATTACAAGAATGTTGATTCCTTTAATTAAGTGAGAGCAACTGATTCGTCATGCAGAAGCAAACAGATGTACTACTCTAATAATACACTTTTTTTCCAACAAATAAAAAATAAAATGTTGAGTGCTGTCATGCAACTGTGCGTTTTGAATATCTTTGAAATCCTCCAACTACTGGCCTCATTTCCTTCTATTGTAAGGCTTCACTCTAACCACATTATTATTTTTTTTGTACCTAAAACCCCACTGGATTGGACCCGTGTCGCGCTCTGTGGAGCTGGTCTAGTTTTGGTTTTGAGGACATTCTCCTGAATGTCATGTGGTCTAGACATTGAAGACGGATGATAATGTGTGTGTCGTGTGTTTGGAATCTGCAG
Seq C2 exon
AGACCATCTGGTGCTGTGGCCATGGGCGGTGCTCTTGCGCGACCCAGTTGGCTGAGTTCTCCGACGCTGGGCAGAGCCAACCGGTTCCTGAGCACTGCCGCCGTCAGCCTGATGACCCCACGGAGACCCCTTGCCCCGCCAGAGAAGGTCAAAGTGCGGACCCTCGCCGTAGAGCAACGAACAGAGGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031269:ENSDART00000148147:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.427
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]