GgaINT0022713 @ galGal4
Intron Retention
Gene
ENSGALG00000002486 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr12:2357584-2358353:+
Coord C1 exon
chr12:2357584-2357690
Coord A exon
chr12:2357691-2358154
Coord C2 exon
chr12:2358155-2358353
Length
464 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCCCTTAATTTCTTCTCAGTCT
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATGACCTGGCTGCAAAAGCCAATGTCCTAATTGATCCTGCGGAGCTGCAGGCAGTGACTATGGATGATCTTGATGAAGATGAGGAATCGGCAACATCAGCAGCACAG
Seq A exon
GTGAGCCACTGGTGCTGGGCAGCAAGCTTAGCCTCTAGCTTGAAAAGCTTTGTTTAGGGGAAAGCAGTGTCTGGTCCAGGACTGTAACCAGCCCATGGGCAGCCAGGTTAACAGCTGAACTTGTGGGAGATCACCAAGGACCCAGGTGCACCAAGTCTGAGCAGCCACGTTTTCTCTGCACTGTAACTGTCCCTTGATCTGATTGTGGCCCTCTCTGTGGCAATTCTCGATGCTTACTTTTAAAGGAGGGCATGGCAGCTGTAGGCACAGCTGCTTCTTGCTGTGCAGATCTGCTGCTCGTGCCTGACATGTGCCCCAGATGAAGGAAACACACATTGGCTAACTGAGCATCATCTCCCTTTCCAGTAGCCCTCGTGCATCTGTACCAAAATCCCTGCAGGAAAAAGGGAGGAGTAACAAGCAGCATGACAGCTAGAACTCTTTCTCCCTTAATTTCTTCTCAG
Seq C2 exon
TCTCAGCGTCCCTCTGCCACCCTAGCCATTGGTGGAGCTCTTGCCAGACCTGGCTGGCTCAGCTCTCCCACCCTGGGCCGTGCCAACCGTTTCCTCAGCACAGCGGCCGTCAGCCTGATGAACCCACGGCGGCCTCTTGGTACCCTTGAGAAGGTCAAAGTACGCACTCTAAGTGTGGAACAGCGTACAGAGGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486:ENSGALT00000003917:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.269
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAAAGCCAATGTCCTAA
R:
TGTCCTCCTCTGTACGCTGTT
Band lengths:
297-761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]