HsaINT0141242 @ hg38
Intron Retention
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr3:49704650-49705182:+
Coord C1 exon
chr3:49704650-49704756
Coord A exon
chr3:49704757-49704983
Coord C2 exon
chr3:49704984-49705182
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
3' ss Seq
GCCGCCTTTCTTCACTGCAGCGC
3' ss Score
9.16
Exon sequences
Seq C1 exon
ATGACCTTGCTTCCAAAGCCAACATTGTGATCGACCCACTGGAGCTCCAGTCAACCGCCATGGATGACCTAGATGAGGATGAGGAGCCAGCCCCAGCTATGGCCCAG
Seq A exon
GTGCCGCAGTGGGGGCAGGCGGTGGGATTTGTGTTGGGCTTATCCTGTATCTTATGGGCAGGGGTCTCATCCAGGGCCACTTCCCGCTCCATGCAGGCAAAGGGTTTCTCACTGGGCTGGTGCCTTGCTGTGGGTGGAGGCATGGACCCTCCCTCACAATTCTGCAGCCCCGTGGGCCAAGGGAACCCTGAGCCAGCCCTGGTCCTGGCCGCCTTTCTTCACTGCAG
Seq C2 exon
CGCCCCATGCAGGCCCTGGCTGTTGGGGGGCCACTGCCCCTGCCCCGGCCCGGCTGGCTCAGTTCTCCAACTTTGGGCCGAGCCAACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCCCACGGCGGCCTCTGAGCACCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGTGGAGCAGAGGACCCGTGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068:ENST00000327697:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.472 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAGCCAACATTGTGATCGA
R:
TGTCCTCACGGGTCCTCTG
Band lengths:
295-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development