HsaALTA0007599-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000168758 | SEMA4C
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:HGNC Symbol;Acc:10731]
Coordinates
chr2:97533515-97535708:-
Coord C1 exon
chr2:97535613-97535708
Coord A exon
chr2:97533661-97533663
Coord C2 exon
chr2:97533515-97533660
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
GACCATGTCTTTTCCCTCAGCAG
3' ss Score
7.01
Exon sequences
Seq C1 exon
GCGAGCGCGGGCAGGCGGCGACGCGGGGGCAGGGGTGGACGGCGGTCAGAGCCGAACGCGAGGGCGGCGCCCGGGGACTGGAGCTGCGCGCAATAG
Seq A exon
CAG
Seq C2 exon
GACAGCTGGCCTGAAGCTCAGAGCCGGGGCGTGCGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGCAAGGCTGTGGGGCCTGGGCATTGGGGCTGAGGTGTGGTGGAACCTTGTGCCGCGTAAGACAGTGTCTTCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168758-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGACGGCGGTCAGAG
R:
CCCCGGCTCTGAGCTTCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)