RnoALTA0035599-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016254 | Sema4c
Description
semaphorin 4C [Source:RGD Symbol;Acc:1562837]
Coordinates
chr9:43136931-43139277:-
Coord C1 exon
chr9:43139039-43139277
Coord A exon
chr9:43137077-43137079
Coord C2 exon
chr9:43136931-43137076
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCAGTTTCTTTTCCTTCAGCAG
3' ss Score
6.66
Exon sequences
Seq C1 exon
GGGGTTGGGGGCGGAGAGCGGCGGCTGCAGCGGAGAAAGAACCGGTGCCCGGCGCGGTGGAGCGCCGAACCCGAGCTCTGGGGCGCCGAGAGCCGTGTTGAGACCGAGGGGCGGTGGCGCAGGACAGCCTTAGCGTGCTGGCGGGCGGGCGCAGTCTGGAGCGGCGCGGGGGCAGGGGAGGAAGGTGGCTGGAGCCAAACGCGAGGGCGGCGCCCAGGGATTGGAGCTGCACGGAAGAG
Seq A exon
CAG
Seq C2 exon
GGCTGCTGGACTGAAGTTTAGACTCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGCAGGGCTGTGGGGCCTGGGCATTGGGGCTGAGATGTGGTGGAACCTTGCGCCTCGGAAGACTGTATCTTCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016254-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGAAGGTGGCTGGAG
R:
TGGCAGACACCCAGAGTCTAA
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]