HsaALTA0007987-3/5 @ hg38
Alternative 3'ss
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4 member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:219633274-219633975:+
Coord C1 exon
chr2:219633274-219633457
Coord A exon
chr2:219633866-219633882
Coord C2 exon
chr2:219633883-219633975
Length
17 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
GGGTCCCAGCCCTATTCCAGTTC
3' ss Score
0.75
Exon sequences
Seq C1 exon
CCATCCCAACGATGACAAGGACAGTGGCTTCTTTCCCCGAAACCCATCGAGCTCCAGCATGAACTCGGTTCTGGGGAATCATCACCCAACTCCCAGCCATGGCCCTGATGGGGCGGTGCCTACCATGGCTGATGACCTGGGGGAGCCAGCCCCACTCTGGCCACATGACCCTGACGCCAAGGAG
Seq A exon
TTCTGCGTCCTCAGAAG
Seq C2 exon
CCCCTCCACATGCCTGGGGGAGATGGTCACCGGGGGAAAAGCCTGAAGCTGCTGGAGAAGATCCCTGAAGATGCTGAGGCCACGGTTGTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923-20-25,20-24,20-23,20-22,20-21-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=NA C2=0.668
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(41.7=88.7)
A:
NA
C2:
PF075658=Band_3_cyto=FE(12.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATGGCTGATGACCTGGG
R:
TTTTCCCCCGGTGACCATCTC
Band lengths:
104-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains