MmuALTA0016748-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000006576 | Slc4a3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
Coordinates
chr1:75551637-75552248:+
Coord C1 exon
chr1:75551637-75551820
Coord A exon
chr1:75552139-75552155
Coord C2 exon
chr1:75552156-75552248
Length
17 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
GGGTCCCAGCCCTATTCCAGTTC
3' ss Score
0.75
Exon sequences
Seq C1 exon
CCATCCCAACGATGACAAGGACAGTGGCTTTTTCCCCCGAAATCCGTCAAGCTCCAGTGTGAACTCAGTCTTGGGGAATCACCACCCAACTCCTAGTCATGGCCCTGATGGTGCGGTCCCCACCATGGCTGATGACCAAGGAGAGCCAGCCCCGTTGTGGCCACATGACCCTGATGCTAAGGAG
Seq A exon
TTCTGCGTCCTCAGAAG
Seq C2 exon
CCCCTCCACATGCCTGGGGGAGACGGTCACCGAGGGAAAAGCCTGAAACTGCTGGAGAAGATCCCGGAGGACGCCGAGGCCACTGTCGTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006576-28-32,28-31,28-30,28-28-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=0.708
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(40.1=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(12.2=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGCTGATGACCAAGGAG
R:
GTTTCAGGCTTTTCCCTCGGT
Band lengths:
111-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types