HsaALTA0009100-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39135093-39136494:+
Coord C1 exon
chr3:39135093-39135174
Coord A exon
chr3:39136357-39136399
Coord C2 exon
chr3:39136400-39136494
Length
43 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ATTTCTGTCTCTTATTTTAGACA
3' ss Score
10.08
Exon sequences
Seq C1 exon
TTGATGGCTGACCTGATGTTTAGAAAACAGAAACATGAAGCGGCCATCAATCTTTACCACCAAGTCTTGGAGAAAGCGCCAG
Seq A exon
ACAATTTTTTGGTATTGCATAAATTAATCGATCTGCTAAGAAG
Seq C2 exon
AAGTGGAAAACTTGAAGACATTCCTGCCTTCTTTGAATTGGCCAAGAAGGTGTCTAGCCGGGTGCCTTTGGAACCAGGGTTCAATTACTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-46-43,46-42,46-41,46-40-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(5.9=14.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAACATGAAGCGGCCA
R:
GAACCCTGGTTCCAAAGGCAC
Band lengths:
139-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains