HsaINT0174159 @ hg38
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39135093-39136507:+
Coord C1 exon
chr3:39135093-39135174
Coord A exon
chr3:39135175-39136356
Coord C2 exon
chr3:39136357-39136507
Length
1182 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ATTTCTGTCTCTTATTTTAGACA
3' ss Score
10.08
Exon sequences
Seq C1 exon
TTGATGGCTGACCTGATGTTTAGAAAACAGAAACATGAAGCGGCCATCAATCTTTACCACCAAGTCTTGGAGAAAGCGCCAG
Seq A exon
GTAATTCTGCCCATGGAGACTGCCTGTACCAGTTCCCACTGAGCAAGGGCCGCTCTCCCAGAGAAGGGTGGGACCTCTCCCTCCTTCCTGACTGGGCAGAGGAAGCCCCTTCCTCCCTGATTGTTCCAGAGAAGCAGGAAACTGATAAAGACCCAGTGGAACGTGCCGGCCCTTCCCGAGTCCAAGGGGCCAGTTCCTGGTCTCAAGGACTTGGCACTGGACCCAGGACAGCATGTCTGTCCCCAAATCACAGCCAATGGGGCTTGACACAGTCCCCTTTTGAGGTCACAGCCACTTGTAGGGACTAGAAATTCTCCCCCGTTGTATAGCTTCATTCCCATTCACTGCAGCGTAAAACCACCCCTTATTGCTGGGGAAAGGGGCCAGACCTGAGGCTCAGGTTGGAGCCCTGGCAGGCCCATGGCAGTGTGCCCATAGGCCCAGGAGGTCACCACGGTTAGGAGTATGGGTGCTGGGGCCAGGCTGCCTGGGTCTGAGTCCTGGTCTACCACTTACTGGTTGTGCAACTTTCAGCAAATTATTTCTCCATGTCTCAGTGTCCTCATCTGTAAAACAGACACAATAAGAGTACCTACCTAGGCCGGGCATGGTGGCTCACACCTGTAATCCTAGCACTTTGGGAACCCGAGGCGGGCAGATCACAAGGTCAGGGGATCGAAACCATCCTGGCTACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAATTGGCCGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGGGTGGGCTGAGGCAGGAAAATGGCATGAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGGGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGATTAGGTACCTACCTAATCTTGCAGTTAATATATAGGTAAAGCACTTAATACCAGGTACAATATAAGTGCTATATAAGTGTTAGCTGCTATTCTTTACTATTTTTAAGCATTAGTATTATTCTTTACTCAACCCTGGAGACCAGTGGAGACTCTGGAGCTGTTGGAATGTCCCTGCTCAGCCCAGATGGGCAGTATCTCTTGGCTTCTCCTAGGGCCCCAGCACCCTCATCTGATAACAGCTACTGGGCATTTCAGCCTGGAGATTTCTGTCTCTTATTTTAG
Seq C2 exon
ACAATTTTTTGGTATTGCATAAATTAATCGATCTGCTAAGAAGAAGTGGAAAACTTGAAGACATTCCTGCCTTCTTTGAATTGGCCAAGAAGGTGTCTAGCCGGGTGCCTTTGGAACCAGGGTTCAATTACTGCAGAGGTATCTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026:ENST00000431162:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(5.9=14.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGGCTGACCTGATGTTT
R:
CAGCAGTAGATACCTCTGCAGT
Band lengths:
233-1415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains