DreINT0169088 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50124014-50124393:-
Coord C1 exon
chr9:50124312-50124393
Coord A exon
chr9:50124165-50124311
Coord C2 exon
chr9:50124014-50124164
Length
147 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TCATTTAATCTCTTCCCTAGACA
3' ss Score
8.85
Exon sequences
Seq C1 exon
ATGATGGCAGATCTCATGTTCCGGAAGCAGGACTATGAACAGGCTGTATTTCACTTCCAGCAGCTCTTGGAGAGGAAACCAG
Seq A exon
GTGTGTGGTTCCTCTCTGACCTTTTAGCGCATTACACCATTCACATAGCAGCTCTCTTAACCTTTCCCCTGTAGACACTCATATGAACCGCATGAGAAATCCAAGCATCCAGCACACTGTAATGAACTCATTTAATCTCTTCCCTAG
Seq C2 exon
ACAACTACCCAACACTGTCCCGCCTCATCGACCTGCTGCGCAGAGCCGGAAAACTGGAGGAGGTGCCAAGATTCCTGGAGATGGCAGAGAAACACTCATCCAGGGCCAAGTTTGAGCCTGGATACAATTACTGCAAAGGCCTTTACCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131761=TPR_7=PD(5.6=7.1),PF134321=TPR_16=PU(54.0=96.4)
A:
NA
C2:
PF134321=TPR_16=PD(54.7=68.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGATCTCATGTTCCGGA
R:
ACAGGTAAAGGCCTTTGCAGT
Band lengths:
228-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]