MmuINT0167063 @ mm10
Intron Retention
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66201473-66207533:-
Coord C1 exon
chr2:66207452-66207533
Coord A exon
chr2:66201624-66207451
Coord C2 exon
chr2:66201473-66201623
Length
5828 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
GAAGTATTGCTTCTTTCTAGATA
3' ss Score
6.56
Exon sequences
Seq C1 exon
TTGATGGCCGACCTCATGTTCAGAAAGCAAGACTATGAACAAGCAGTGTATCATCTGCAGCAGCTTTTAGACCGGAAACCAG
Seq A exon
GTACATACACACTGACTAATTCCTCAGATCTAATCGTCTTCTTGTCTCCTTAGGCTGTGTTTGTTTTGCTTTTTTATCTTGGAAGTTGTTGGGGAAGGAGCAGTGGATTGACTCTGACTCTGCTAATGCCACACTTGGGTCTAAGTCATTCAAGTGATTTTCAGGAAAGAACCCCACTGTCTATTGGTCTCCTGGTGAACTGTGAGCGAAGCCTGCATGGACTGGCCTGCAATCCCCTGTGTTACTTCAGTGACTTCAGCACCCCAGCTGTCTCCTCAGACTTCTAGCACCGCTGCCACCTCCCTTCCCCTCACCTGAATCCTTACACACCAAATTGAGAGAGCCCCCCACTCCCAGGCCTCAACACTACACTCCAACCTCATCCTTTCTACGTCTGATTCCTCTGGCCCTGGCTTTTCCCTGTGTGCACTGTACACAGCCCCATGGCCACCAAAGAGCTTGACTCTGTGGTTTCTTCTCTCTGGTATCAGTTTCCTTGATCAGCACAGAGCCCTGCAGTGAGAACTCACAGACACAAATTACATCATGTTCTCCTACACACTTTGCCCAGGCCACCATTGTTTGCCCTCATTTCAATTTCCCATATCAAACTGGGTTTTTATTCTATCTCACTGTTCCTGTTTCTTAAGGAGGAATGATCTAGTCTTTCTTGCTATGTATTCTTTAAAGTACAGACTTTTCTTCCCTCACGAGTAGGTTTAAGCTGTCCTTGACCACCTTGCCCTCACATGTTAGAGTTTCTGGGAGAGAAGCTCTCTTGTGTCACGTGGGTTTCCTCTCACGTAGGTTTCCATTACTCAGGAGCGGCATTTCCTGCAAACAGCTGATTGTTGATTGAATTAGTCCACCTGCTGCTTTGGGGCTTTTGTATACAAGTATGCTTTTTTTTTCTACAAGTATGTATTAATTGTGTGACGTAAGAGGTTTCATTATGGCATTTTTATATGAATACAGTGTGAATTCATCATTCTCATTCTACTAACCTCTTCTGCCCTTCCCCATCTCCCTAACACCCTGCCTCTCCAGACAGCACCATTTTTACTTTCATGATTTTTAAAACATGAGTTTCAATGCTTGTGTGTGTCAGAAAAAATGGGGATCGGTGGTGGAGGGGACGTTGTGGATACCAGAGGACAACACTGAGCATTAGTCTCAATAAGCTGCCCATCTCTTTAAGACGCGTTGTTTCACTGGGCGGGAATTCATGGATCAGGCTAACATGACAGGCCGGCAGGGCTAGGCATCCTCCTGTCTGTCTCCCTAGCACTGGGCTTGTGGGCTTATGCCATCACCTGTTACAATTTTACATGGGTTTTCGAGCTGTGAGACAACACTCTGTACCCTACTTATGTGTCTTTTTTAAAATCTATTCATAATTTCAATGTAAGAACATTGTGCTTCAGCAGTACTGAAAGACATGAATCCACACCCCCGAGGCTTGGTGCAGATTTTCTTCCAATCTTGCCTGTTACATATTTTGTCTTCCTTCTTTCTCACCATGTATTCTAAAATATACTACCCTTGAGGGTGCATTGAGGACCTTGCTTTCTGCTTGGCCCAGGACTACAAAGGTCCTAGATCCAGAATGGTCCATGCTAAAGAAATTTCCAACTGAAAGTGGGATGAGCTGATCACCCTAACCCATATATCACACTGTCAAAAATAGCTCTTTGTTACTTTTTAGTATTTGCTAATACACACATGAATATATACCATCTGTATATTTGTCTTCTCTGTTACTGTGTACTTTTCAAAGTCAGTAATAGCGTGCTCCTTTTAAATCCCTGATAGACACAGGCCAGTCACATAGTGCGGAATCAATGATTATTGATTGACTGGATCTGCGGGTGACAGAGTAGTCAGGCAGGAGAGCTCTATTCTAACTGCTCATGTCTTTCTACTCAGATAGCAGTGAGGTTTTCAGAGGACAACAGGGACTGTTGAGAGAGTATTGGAACTTTGAGAAAAGAGAAGGAAATTTGCAAAGAAAATTTGAATGAGTGAATTCATTAGAGAATACATTGCTTGTATCAGTCATCCAGTAGTCAATGAGAGGATTGTTGTCAGTTCTTAACCTTGGTACAGTTTAGTTAAAATTTTGTGCCCATGACCCTTTTCTCTCATAATGTATGTTTTATTCCTGATAGGCCTTTACCTACTTATCTACCCATTTATTTTGTGTCATTCCTTCTAAAACACACAGTGATTTTATGTGTGCATTGTTGATCATGTCCAGTAGCATAACTTAAATTGTGGCTGTATTTAGCTTATTTTAGGAATGTACTGGTTAGGAGCTAGAGCAGTGATGTAGTTGTTAAGGACATTTGGTTCCCAGAAACCCAGGTCACATAGCTAACCACCTGTAAGTCCAGTTCCAGGAAATCCAATGCCTCTGTCCTGGAAGACGCCTGCCTTGTGTACACACAAACACACCGTTAAAAAATGTTTAAGAAAAGAAGTGCACTGTCCAGTTTTATTTGTACTTGAAAATTCCAGTTATATCTGCTCTCAACATATTGTACCTTGTCTCAAATTTTTCCAATCATGTTGAGTTTTCTCCTTTTTGTAGTAATTAATTAACAAGTACCCTAGTTCTGTCTGCGTAGTTGCTAAATAGCTCAGTCAGTCTGTCATCTTCTTCTGACCCACTGCCACAGTTAATCCCCTTGTCACCTCTCCTGTGCTTCCAGCCCTGGGCACCTGCTGCTGCTGGAGATCACGTCATCAGATCAGTATTCAAACCCACGAGCTATCCCTTTGCTCAGAGTAGGTTCACGCTTCAGAGTGAAGCCTACGGTTGTAGCATGATTTTAATAATGCCATGGCCTGGTTAGCCCTCTGCTTATATCTTCATTTCGCTTCCTGTTCTTCAGTAGCATTGAGGTTGCCATGCACCCAGGGCTGCACCCTGCTTGCTTGTGTGCATGCTATCAGCTACTGGGAATACTTCTGTCAGCCTGGCAGTGTCTGGCCCCATCCCAGGCACTGCTCAAAGGTCAGCTTTTTGAGGAAAGCACCTATGGCCTCTCTGGTGCTTTGTATTTCTGCAGCCCTGGACTCCTGGACTCTGCATCTCCTACGCACCCCTTGGGCAGAAACAGAAGGGAAAGCAAAGTGTAATCTGTATTGGTTGTCACTCCTGAACCTGTGTGGCTAAGGATCTTTGCTTTTTATTGGTAAATGTGTGCATATTAGAACTATGTCTTGTGATATCTGCCCATCAATAAGACTGTACCAGCTATTTTTTACCATATGATATATTGCCATTTTCAAAAATGAAAACACTTCATTCTCCAAATGCGATGGCTAATGGAAAGAAAATGTAGTCTCTCTGTGATCATTATTGCCTTGAACTAATGATGAATATATTTCATCAGTACTAGATGGAATTTTTCAAGAAAATGTCTTCACAGTGTTGAATATAGATATTTCAAAATATGCCTCACATATTTGCAATAACATACAAAAATTTTGGCCAGATGCTTTAATATTGAGTCCTTGCTTAGTTCAGTTCTACTTTTAGCCTCTTTGGCTTTTTGGTGGATTATGCAGCCTACTGTCCAAAGACCTAAAGGTGTAAGTGCAGCTAACCACACTGGGAGTTTATAAATCACATTCATGCCTTCATTTGATTTAATTGAATGGTCACAGAACTATCCATATGTCTATTACAGAGGATGGCTGAATGTGATATACATATAAAACATTAATTACTTGAAAATGTAAGCAAACTCTTAACATGACAACGGGATGAACTCTGAAGACAAGCCAGACACATGGCCAAATGCCGTGGGATATCCCGTCAGCCACCTGGACATCATAAGAATCATAGAAGCAGAGAGCAAAATGGAAAGAGGTGGAAGAGACTAAGGTGCAGAGTTTCCATTTAGAAAGGTTACATAAGCTCTGGGATGGATGGATGGATGGATGACCACAGCTTACACAACAATGTGAACATACCCAATGCCACTGAAGTGTATCCTTAGAAATGATTGATATTACAATCATTTTAAGAAAAATGAGTCATTTTTCACATACAGATAGTGTACTTGTCTTCACAGTGATAAAAGACAAGGCCAATTTTGAATTCCCTTTCCTTGTAGTGATACTAAAAGGCAGAATAAACAAAATATACAGACTCAAAATTAGGTTGAGAGAGAGCAGGATTTGGTTGTTTTCACTTATATAACTGAATAGAAGCAAACCTTCCAAAGTTCTTTTCCTAATTTTTTATTCTGATAAAATGTATAACATAAAAATTACCATATGACCCATCTCTAAGCATAGTTCAGTGGCATTAGGTATGTTGACATTGTTGTGCAAGTCGTGGTGATCCATCCATCCCAAGCCTTATGCAACACTTCTAAACTAACTCTGTACCTCAGTTCCCTTCCACCTCTGAACATTTTACTTTCTGCTTCTATGATTCTCAGCAAGTCCAGGTGGCTGACGGGATATCCCACAGCATTTGGCCATGTGTCTGGCCTAAGTCGCCTAGCATAGTCTTCAGAGTTCATCCCGTTGTCATGTTAAAAGTTTGCTTAAATTTTCGAGTCACTAATGTTTTATATGTGCATATATCACATTCAGCTGTCCTCTATAGTAGACGTATGGGTAGTCCCCCGCCCATCCTGATTATTGTGAATAGCACTACTGTGAATATTTGCACAGATGTCTCCCTGAGTCCTTATTCGTTGCTCTAGGCAGGGCCTCATAATGTCCTGATACATCAGGTAATACAATGTCTTCATTTTTTAAAATTAGAATGGAGAATAATTTGTTCTGAAAATAGGGCTATGTTTGTTTGCTCATGAAGATACTTTAATCCTGTGAATTTACACCAAGTTAGTCCTCACAGTAGTATGTGTAAGAATTTTAACAAATTCTCTATGAGTTCTGTGATATTGAAACACAAGAGCCCTAAGACCTAAAAACAAACTCCCAGAGAAATTAACTATTCATGTGATAGTCTGTAGGGCAGCTGTTAAAAATCAAAGCATTAAAGGCCACTTAATAACAATTAAGTATTTATTGTTTAGTGTTGAATCAAAGCCCTAAGTGTCGGCCAAATTTCATTTACAAATAGTTGGCTATTAGTCATGCATACGTGACTTTACTCATCTCTTGAATGGGTCATTTTTCTCCTCCACACATGATTCTGTACATTTTTTTCCTTCTTTTGGTGTTCATGAATCATTATTAAAATCATGCTCGAATCCAAGTACATTACTAATAAGGGAAAAGTAGCAGGAACTTAGAAGAAAGTTACTGTGGAGCCAGAGAACTGGACATGCTGTTATCTGTAGGAAACAGATGCAAGAAGATTAAAATCCTGAGGCTGCAGTACGATCAGCCAAGTCTAGTCTTTAGCATTCACACATGTTAAACAAGTTCTGGGATAAAACTTGTGATTGCTTACCTCAGGCACAGTCCAGCACGTCCACTACCATACTTCATCTGCAGTAAGTATGAAAAGCATCTCAGGAACAACTGTCAATCGATCTTCCTGGATTTCAGAGTCTAGATGCCTCAGATGAAAAGCATTTCTAGAAGGCTTGGCCCTAGGAAAATCGAAAAGTCATCAGATGTGCCTGGACTGTGTTCTCTCCCACAGTGGCTGCCCCAGTGAAGCAGGCATCATTTCACAGGTGATCCAGGCTGTACACTTCCTTAGGAATGAATTACACATGAAGTAGTCCTTTGGTCATATCTGTTTCATTTGAAGTAAGCTGTACATTAATGAAGAAGAACCATCAGAACAAATGTTTTAACGTGTGATCTATACCTGAAGTATTGCTTCTTTCTAG
Seq C2 exon
ATAATTTTATGACTTTGTCCCGTTTGATTGATCTCCTGAGAAGATGTGGGAAACTTGAGGATGTTCCGAGATTTTTCTTGATGGCTGAGAAACACAACTCCAGAACAAAATTGGAGCCAGGATTTCAGTACTGTAAAGGATTACATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848:ENSMUST00000102718:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(5.9=14.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types